Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89318 | Canola | nucleus | 82.15 | 50.99 |
| AT4G26630.1 | Thale cress | nucleus | 71.4 | 40.89 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 51.26 | 37.4 |
| CDY06563 | Canola | nucleus | 53.09 | 33.77 |
| CDY69625 | Canola | nucleus | 22.2 | 33.22 |
| CDY28645 | Canola | nucleus | 54.69 | 30.14 |
| CDY20754 | Canola | nucleus | 54.69 | 30.1 |
| CDY17352 | Canola | extracellular, vacuole | 55.15 | 29.11 |
| Solyc07g065490.2.1 | Tomato | nucleus | 42.11 | 29.02 |
| KRG98507 | Soybean | nucleus | 47.83 | 28.44 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 21.97 | 27.59 |
| KRG98502 | Soybean | nucleus | 45.54 | 27.26 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 42.33 | 27.09 |
| KRH46360 | Soybean | nucleus | 44.85 | 26.49 |
| Solyc10g006000.2.1 | Tomato | nucleus | 33.41 | 26.35 |
| CDX77921 | Canola | nucleus | 24.03 | 24.65 |
| CDY37915 | Canola | nucleus | 23.8 | 24.59 |
| CDX97358 | Canola | nucleus | 68.19 | 24.57 |
| KRH46364 | Soybean | nucleus | 44.62 | 24.16 |
| CDY62886 | Canola | nucleus | 25.63 | 23.05 |
| CDX81185 | Canola | nucleus | 27.23 | 21.25 |
| CDY41517 | Canola | nucleus | 23.8 | 21.22 |
| CDY39861 | Canola | nucleus | 17.39 | 21.05 |
| EER91265 | Sorghum | nucleus | 28.83 | 19.53 |
| CDY16716 | Canola | nucleus | 24.26 | 19.06 |
| Zm00001d013757_P010 | Maize | nucleus | 27.46 | 18.38 |
| CDY05865 | Canola | plastid | 13.27 | 18.12 |
| Os03t0596900-01 | Rice | nucleus | 27.23 | 16.93 |
| Zm00001d033159_P001 | Maize | nucleus | 14.19 | 13.87 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 9.15 | 12.46 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 27.0 | 12.14 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 27.0 | 11.91 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 26.54 | 11.86 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 26.54 | 11.58 |
| OQU91413 | Sorghum | nucleus | 24.03 | 7.77 |
Protein Annotations
| EnsemblPlants:CDX94304 | EnsemblPlantsGene:GSBRNA2T00157399001 | InterPro:Treacle-like_TCS | ncoils:Coil | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 |
| PRINTS:PR01503 | ProteinID:CDX94304 | ProteinID:CDX94304.1 | SEG:seg | UniParc:UPI0004EE34A4 | MapMan:35.2 |
Description
BnaC01g18800D
Coordinates
chrLK031881:+:108653..112289
Molecular Weight (calculated)
48922.0 Da
IEP (calculated)
9.644
GRAVY (calculated)
-1.371
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDKTEKVE EGTVKDEDGD EKEEIKDDKE DEKAESESKG SKKLGKGKSS GKKVGEKTKK DTEPKTPFPD RPVRERKSVE RLVAVIDRDS SKEFHIEKGQ
101: GVYLKDIPNV AYKVTRKKSD EILKLLHTIL FARRGKAAQI KTNILGFSGF VWHGNEEKAR EKIKEKLDKC NKEKLWEFCD VFDIHVSKAT TKKEDIITKL
201: IEFLEKPHVK SDVAANEKDK SSTGAKRKRT PKQSSPAAGS SSSKRSAKRK RKSGEGTKAV KKILADSEDE SEEEKGEEEK EKNAEEEVKN KEEENENGIP
301: DKSEDEAPQP SESEEKDEPE EHSEEETPKK KRGSKVSAGK KESAGRARTK KPAAAAKSSP PEKVTQKRSS AKRKKTDDDS DASPKASSKR KKSEKATKAP
401: APSKSASEEK PDALERILFL DELHLQKLTY TAATNVF
101: GVYLKDIPNV AYKVTRKKSD EILKLLHTIL FARRGKAAQI KTNILGFSGF VWHGNEEKAR EKIKEKLDKC NKEKLWEFCD VFDIHVSKAT TKKEDIITKL
201: IEFLEKPHVK SDVAANEKDK SSTGAKRKRT PKQSSPAAGS SSSKRSAKRK RKSGEGTKAV KKILADSEDE SEEEKGEEEK EKNAEEEVKN KEEENENGIP
301: DKSEDEAPQP SESEEKDEPE EHSEEETPKK KRGSKVSAGK KESAGRARTK KPAAAAKSSP PEKVTQKRSS AKRKKTDDDS DASPKASSKR KKSEKATKAP
401: APSKSASEEK PDALERILFL DELHLQKLTY TAATNVF
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.