CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37211	Canola	mitochondrion	99.51	99.51
Bra037210.1-P	Field mustard	mitochondrion	99.19	99.19
AT2G13560.1	Thale cress	mitochondrion	92.56	91.81
KRH66385	Soybean	mitochondrion	85.44	84.89
Solyc08g013860.2.1	Tomato	plastid	84.95	83.87
VIT_15s0021g00500.t01	Wine grape	mitochondrion	84.79	83.84
GSMUA_Achr7P06830_001	Banana	mitochondrion	80.58	79.3
Zm00001d021546_P003	Maize	mitochondrion	78.64	78.51
Os07t0496200-01	Rice	mitochondrion	78.8	78.3
KXG36268	Sorghum	mitochondrion	78.32	77.81
TraesCS2D01G234500.3	Wheat	mitochondrion	78.32	77.69
TraesCS2A01G237000.1	Wheat	mitochondrion	78.32	77.69
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	78.16	77.53
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	78.8	74.12
CDY33808	Canola	endoplasmic reticulum, extracellular	4.05	71.43
CDY68746	Canola	mitochondrion	61.65	62.98
CDX74340	Canola	mitochondrion	61.49	62.5
CDY51151	Canola	mitochondrion	61.0	62.11
CDY07209	Canola	mitochondrion	61.0	61.9
CDY35901	Canola	cytosol	39.48	41.92
CDY61446	Canola	cytosol	38.67	40.65
CDX91199	Canola	cytosol	38.67	40.65
CDX88203	Canola	cytosol	38.67	40.65
CDX80544	Canola	cytosol	38.67	40.65
CDX78432	Canola	cytosol	38.67	40.65
CDX70409	Canola	cytosol	38.67	40.65
CDX82748	Canola	cytosol	36.57	38.77
CDX68115	Canola	plastid	39.32	37.21
CDX85926	Canola	plastid	36.89	36.36
CDY02046	Canola	mitochondrion	31.88	35.24

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:A0A078D292	EnsemblPlants:CDX81448	ProteinID:CDX81448
ProteinID:CDX81448.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470
GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00135033001	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF53	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	UniParc:UPI0004EE6103	SEG:seg	:	:	:

Description

BnaC09g08590D

Coordinates

chrLK031824:+:1871037..1876251

Molecular Weight (calculated)

69065.4 Da

IEP (calculated)

5.742

GRAVY (calculated)

-0.215

Length

618 amino acids

Sequence
(BLAST)

001: MGIGNKLRLN SRMLHRRILY SSARSFTTTE GHRPTIVHKR SLDILHDPWF NKGTAFTMTE RDRLDLRGLL PPSVMDSEQQ IQRFMTDLKR LEEQARDGPS
101: DPNALAKWRI LNRLHDRNET MYYKVLIANI EEYAPIVYTP TVGLVCQNYS GLFRRPRGMY FSSEDRGEMM SMVYNWPAEQ VDMIVVTDGS RILGLGDLGI
201: HGIGISVGKL DLYVAAAGIN PQRVLPVMID VGTNNEKLLK DPLYLGLQQH RLENDEYIEV IDEFMEAVFT RWPHVIVQFE DFQSKWAFKL LQRYRSRYRM
301: FNDDVQGTAG VAIAGLLGAV RAQGRPMLDF PKMKIVVAGA GSAGIGVLNT ARKTMARMLG NTETAFESAQ SQFWVVDAQG LITEGRDNID PEALPFARKT
401: KEMERQGLKE GASLVEVVRE VKPDVLLGLS AVGGLFSKEV LEAMKGSTST RPAIFAMSNP TKNAECTAQE AFSILGDNII FASGSPFKNV DLGNGHVGHC
501: NQGNNMYLFP GIGLGVLLSG TPIVSDGMLQ AAAECLAAYM SEEEVLKGII YPPISRIRDI TKRIAAAVIK EAIEEDLVGG YREMDARELQ KLNEEELMAY
601: VENNMWSPEY PTLVYKDD

Best Arabidopsis Sequence Match ( AT2G13560.1 )
(BLAST)

001: MGIANKLRLS SSSLSRILHR RILYSSAVRS FTTSEGHRPT IVHKQGLDIL HDPWFNKGTA FTMTERNRLD LRGLLPPNVM DSEQQIFRFM TDLKRLEEQA
101: RDGPSDPNAL AKWRILNRLH DRNETMYYKV LINNIEEYAP IVYTPTVGLV CQNYSGLFRR PRGMYFSAED RGEMMSMVYN WPAEQVDMIV VTDGSRILGL
201: GDLGVHGIGI AVGKLDLYVA AAGINPQRVL PVMIDVGTNN EKLRNDPMYL GLQQRRLEDD DYIDVIDEFM EAVYTRWPHV IVQFEDFQSK WAFKLLQRYR
301: CTYRMFNDDV QGTAGVAIAG LLGAVRAQGR PMIDFPKMKI VVAGAGSAGI GVLNAARKTM ARMLGNTETA FDSAQSQFWV VDAQGLITEG RENIDPEAQP
401: FARKTKEMER QGLKEGATLV EVVREVKPDV LLGLSAVGGL FSKEVLEAMK GSTSTRPAIF AMSNPTKNAE CTPQDAFSIL GENMIFASGS PFKNVEFGNG
501: HVGHCNQGNN MYLFPGIGLG TLLSGAPIVS DGMLQAASEC LAAYMSEEEV LEGIIYPPIS RIRDITKRIA AAVIKEAIEE DLVEGYREMD AREIQKLDEE
601: GLMEYVENNM WNPEYPTLVY KDD

Arabidopsis Description

NAD-ME1NAD-dependent malic enzyme 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIU0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.