CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82748
CDY24630
CDY28064
CDY34905
CDY35901
CDY60823

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	CDX82748	AT2G19900.1	21798944
AT1G79750.1	CDY35901	AT2G19900.1	21798944
AT1G79750.1	CDY24630	AT3G07310.1	21798944
AT1G79750.1	CDY28064	AT3G07310.1	21798944
AT1G79750.1	CDY34905	AT3G07310.1	21798944
AT1G79750.1	CDY60823	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68115	Canola	plastid	98.41	94.49
AT1G79750.1	Thale cress	plastid	87.72	85.14
HORVU5Hr1G053200.1	Barley	endoplasmic reticulum, extracellular	7.97	76.92
KRH09931	Soybean	mitochondrion, plastid	76.4	74.49
CDX91199	Canola	cytosol	69.22	73.81
CDX88203	Canola	cytosol	68.9	73.47
CDY61446	Canola	cytosol	68.9	73.47
CDX80544	Canola	cytosol	68.74	73.3
PGSC0003DMT400068027	Potato	plastid	74.64	73.12
KRH23402	Soybean	nucleus	75.44	73.11
CDX78432	Canola	cytosol	68.1	72.62
VIT_09s0002g03620.t01	Wine grape	cytosol	74.0	72.5
CDX70409	Canola	cytosol	67.78	72.28
PGSC0003DMT400006726	Potato	plastid	73.37	71.65
CDY35901	Canola	cytosol	66.35	71.48
KRH44278	Soybean	plastid	72.73	71.14
CDX82748	Canola	cytosol	61.24	65.87
Solyc08g066290.2.1	Tomato	cytosol	7.34	63.89
CDY02046	Canola	mitochondrion	54.07	60.64
KRH47214	Soybean	mitochondrion	53.75	58.61
CDY37211	Canola	mitochondrion	36.52	37.05
CDX81448	Canola	mitochondrion	36.36	36.89
KRH01213	Soybean	cytosol, plastid	16.43	36.27
CDY68746	Canola	mitochondrion	33.81	35.04
CDY07209	Canola	mitochondrion	33.97	34.98
CDY51151	Canola	mitochondrion	33.81	34.93
CDX74340	Canola	mitochondrion	33.81	34.87
CDY33808	Canola	endoplasmic reticulum, extracellular	1.28	22.86

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:A0A078D9J8	EnsemblPlants:CDX85926	ProteinID:CDX85926
ProteinID:CDX85926.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00143759001
InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0004EDFC4D	SEG:seg	:	:	:	:

Description

BnaC06g22080D

Coordinates

chrLK031843:+:866414..870085

Molecular Weight (calculated)

69539.0 Da

IEP (calculated)

7.209

GRAVY (calculated)

-0.166

Length

627 amino acids

Sequence
(BLAST)

001: MAFPIDHSLA DLTKLNLLPK PHGHASDMFP FRLSVFPRVH LSLRTSTSRV LSSLGSKVDP NGSVLIETTT PPEPSPDVTG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSQRERDAH YLRGLLPPTV ISQDLQVKKM MHTLRHYQVP LQRYMAMMDL QETNERLFYK LLIEHVEELL PVVYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKILEVLR NWPEKNIQGM GIPVGKLSLY TALGGVRPSA CLPVTIDVGT NNEKLLNDEF YIGLRQRRAT GEEYAELMHE
301: FMTAVKQNYG EKVVIQFEDF ANHNAFDLLA KYGTTHLVFN DDIQGTASVV LAGLIGALRF VGGSLANHRF LFLGAGEAGT GIAELIALEI SKKCQIPLEE
401: ARKNIWLVDS KGLIVSSRKE SIQHFKKPWA HDHKPIKELV DAVKAIKPTV LIGTSGVGQT FTQEVVETMA ELNEKPIILS LSNPTSQSEC TAEQAYKWSK
501: GRAIFASGSP FAPVEYEGKT FVPGQANNAY IFPGFGLGLI MSGTIRVHDD MLLAASEALA EQLMEEHYEK GMIFPPFRNI RKISARIAAK VAAKAYELGL
601: ATRLPQPKEL EKCAESSMYS PSYHSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.