CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDY05402
CDY05452
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	CDX80461	AT5G24660.1	21798944
AT3G07310.1	CDY05402	AT5G24660.1	21798944
AT3G07310.1	CDY05452	AT5G24660.1	21798944
AT3G07310.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040372.1-P	Field mustard	plastid	98.86	99.15
CDY34905	Canola	plastid	93.18	95.91
CDY28064	Canola	plastid	76.7	73.17
AT3G07310.1	Thale cress	plastid	75.28	72.01
CDY24630	Canola	plastid	76.14	71.47
CDX85350	Canola	plastid	61.65	63.82
CDX86293	Canola	plastid	61.65	63.82
VIT_00s2037g00010.t01	Wine grape	cytosol	13.92	45.79
VIT_00s0360g00020.t01	Wine grape	mitochondrion	31.82	45.71
PGSC0003DMT400022517	Potato	mitochondrion	31.82	44.98
Solyc09g057580.2.1	Tomato	plastid	26.99	44.6
PGSC0003DMT400053202	Potato	cytosol	34.94	42.56
PGSC0003DMT400022519	Potato	plastid	46.59	42.05
KRG99623	Soybean	plastid	44.32	41.94
KRH46625	Soybean	plastid	44.6	41.42
PGSC0003DMT400084936	Potato	cytosol	34.66	40.8
KRH07429	Soybean	plastid	44.89	40.72
Solyc06g007550.1.1	Tomato	cytosol	31.53	39.5
KRH66142	Soybean	plastid	43.47	38.93
Solyc06g007560.1.1	Tomato	plastid	38.35	37.29
Zm00001d049232_P002	Maize	mitochondrion	37.78	34.1
TraesCS1B01G418600.1	Wheat	mitochondrion	37.78	34.02
TraesCS1A01G390400.1	Wheat	mitochondrion	37.78	34.02
Os11t0456100-01	Rice	mitochondrion	36.93	33.68
TraesCS1D01G398600.1	Wheat	mitochondrion	37.22	33.5
HORVU1Hr1G086110.1	Barley	plastid	38.64	32.54
CDX92162	Canola	plastid	32.67	27.71
CDX82345	Canola	plastid	31.82	27.59
CDY23684	Canola	plastid	31.53	27.27
CDX95820	Canola	plastid	31.53	26.75
CDX75937	Canola	plastid	31.25	26.57
CDY58279	Canola	plastid	31.25	25.88
CDY29940	Canola	plastid	28.69	25.19
CDY35549	Canola	plastid	27.56	24.13
CDY19857	Canola	nucleus	6.25	21.15

Protein Annotations

EnsemblPlants:CDY60823	EnsemblPlantsGene:GSBRNA2T00030105001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	ProteinID:CDY60823	ProteinID:CDY60823.1	UniParc:UPI0004EF324F	UniProt:A0A078J7U5	MapMan:35.1

Description

BnaAnng17260DBnaAnng17260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7U5]

Coordinates

chrLK033918:+:40956..42351

Molecular Weight (calculated)

39949.5 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.253

Length

352 amino acids

Sequence
(BLAST)

001: MDSCLSNQAS LSFLPTRSRR QRGDRSGFVL PAMRKVQYRP MVMVATAGQN SYWPGSSLNA PLKPRTSQGR FLIRLLLSKR HLFHYAAADE LRLLADNREA
101: ALARMSLSSG SDEASLHRSR IAQLMERYCK TAVQDIMYML ILYKYSEIGV SLAPKLSRCI HNGRLETWPK KDRELESIHS CDALELIKEH VNAVIGLRAN
201: SCLKEKTQIQ KLHLTKIYVA SILCGYFLKS ASLRHQLECS LPDLHGSGYV NGPILVSTKE HLRHYITGFD LETMQRCAKP RTVEARSLIK KQCLALFGME
301: DSDETILTSY LSLKRLVLEA VAFGTFLWDT ELYVDGAYKL NENAEEQENR SI

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.