CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92162	Canola	plastid	89.64	89.64
CDX75937	Canola	plastid	78.07	78.26
CDX82345	Canola	plastid	75.9	77.59
AT3G17800.2	Thale cress	plastid	79.52	77.28
CDY19857	Canola	nucleus	19.04	75.96
CDY23684	Canola	plastid	66.51	67.81
CDY58279	Canola	plastid	68.92	67.29
Solyc03g098000.2.1	Tomato	plastid	60.24	64.77
VIT_17s0119g00070.t01	Wine grape	plastid	63.13	62.53
PGSC0003DMT400083980	Potato	plastid	62.17	61.28
KRH60570	Soybean	plastid	58.8	61.0
GSMUA_Achr1P22120_001	Banana	plastid	56.39	60.94
KRH41876	Soybean	plastid	58.55	60.15
KXG37708	Sorghum	plastid	59.52	59.52
HORVU4Hr1G008300.1	Barley	plastid	57.83	58.82
KRH39016	Soybean	plastid	58.55	58.7
TraesCS4B01G050500.1	Wheat	plastid	57.59	58.44
GSMUA_Achr8P30820_001	Banana	mitochondrion	58.31	58.17
KRH48705	Soybean	plastid	57.11	58.09
TraesCS4D01G050700.1	Wheat	plastid	57.35	58.05
TraesCS4A01G264500.1	Wheat	plastid	57.59	57.87
Zm00001d033787_P001	Maize	plastid	58.31	57.21
Zm00001d013411_P002	Maize	plastid	56.63	56.49
VIT_15s0024g00690.t01	Wine grape	plastid	52.53	53.04
Os03t0717900-01	Rice	cytosol	58.07	52.97
CDY29940	Canola	plastid	40.0	41.4
CDY35549	Canola	plastid	39.52	40.8
CDX86293	Canola	plastid	27.71	33.82
CDX85350	Canola	plastid	27.23	33.24
CDY34905	Canola	plastid	26.99	32.75
CDY60823	Canola	plastid	26.75	31.53
CDY28064	Canola	plastid	27.95	31.44
CDY24630	Canola	plastid	27.95	30.93

Protein Annotations

EnsemblPlants:CDX95820	EnsemblPlantsGene:GSBRNA2T00101766001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	ProteinID:CDX95820	ProteinID:CDX95820.1	SEG:seg	UniParc:UPI0004EEBE45	MapMan:35.1

Description

BnaC05g35710D

Coordinates

chrLK031891:+:500520..502406

Molecular Weight (calculated)

45632.4 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.274

Length

415 amino acids

Sequence
(BLAST)

001: MDAAATASLI RSSVLPLKTS DNGAGSMFLT ASGPGFTRFG PGRQLRFRQN AFARFSRPLQ SSTTRRSFVV KASASNDDAS SSAAKPIAPL QLESPAGQFL
101: SQILVTHPHL VPAAVEQQLE QLQTDRDSEG QNKDASSAPG TDIVLYRRIA ELKENERRRT LEEILYALVV QKFMEANVSL VPSITPSSSD PSGRVDTWPT
201: KVEKLEKLHS SEMYEMIHNH LALILGPRMG DLASIAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKSM KILPGGLDDS KTSVEQPENV TFKAVSSHPE
301: VGSFAGGVSA KGFGSEIKPS RLRTYVMSFD SETLQRYATI RSREGVGIIE KHTEALFGKP EIVITPEGTV DSSKDEQIKI SFGGMKRLVL EAVTFGSFLW
401: DVESHVDARY HFVLN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.