Factsheet for TraesCS4B01G050500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G132200.1
TraesCS2B01G154700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	TraesCS2A01G132200.1	AT2G41680.1	21798944
AT1G48450.1	TraesCS2B01G154700.1	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G050700.1	Wheat	plastid	98.53	98.29
HORVU4Hr1G008300.1	Barley	plastid	96.33	96.57
TraesCS4A01G264500.1	Wheat	plastid	97.31	96.37
KXG37708	Sorghum	plastid	77.26	76.14
Zm00001d033787_P001	Maize	plastid	76.04	73.52
Zm00001d013411_P002	Maize	plastid	73.59	72.36
Os03t0717900-01	Rice	cytosol	79.46	71.43
GSMUA_Achr1P22120_001	Banana	plastid	60.15	64.06
GSMUA_Achr8P30820_001	Banana	mitochondrion	62.84	61.78
Solyc03g098000.2.1	Tomato	plastid	56.23	59.59
CDY19857	Canola	nucleus	14.91	58.65
CDX82345	Canola	plastid	57.95	58.37
CDX95820	Canola	plastid	58.44	57.59
Bra001683.1-P	Field mustard	plastid	57.21	57.35
CDX92162	Canola	plastid	58.19	57.35
AT3G17800.2	Thale cress	plastid	59.66	57.14
CDX75937	Canola	plastid	57.7	57.0
Bra022245.1-P	Field mustard	plastid	57.7	56.87
PGSC0003DMT400083980	Potato	plastid	58.19	56.53
KRH60570	Soybean	plastid	54.77	56.0
KRH48705	Soybean	plastid	55.75	55.88
KRH39016	Soybean	plastid	55.99	55.31
KRH41876	Soybean	plastid	54.52	55.2
VIT_17s0119g00070.t01	Wine grape	plastid	56.48	55.13
CDY23684	Canola	plastid	53.55	53.81
Bra032255.1-P	Field mustard	plastid	53.55	53.81
AT1G48450.1	Thale cress	plastid	54.28	52.48
CDY58279	Canola	plastid	54.28	52.24
VIT_15s0024g00690.t01	Wine grape	plastid	46.94	46.72
TraesCS1B01G418600.1	Wheat	mitochondrion	27.14	28.39

Protein Annotations

EnsemblPlants:TraesCS4B01G050500.1	EnsemblPlantsGene:TraesCS4B01G050500	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4B:+:39043250..39045376

Molecular Weight (calculated)

44968.3 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.282

Length

409 amino acids

Sequence
(BLAST)

001: MEAAAAAAVA LRSPAAAGAA PSRRAAAASS LPFERRRSFA LGSIKGLGRR QLTSRRLRSV VRASSSSPSE SLPSSSPIAP LQMESPIGQF LSQILVTHPH
101: LLPAAAEQQL EQLQTVQDSS EKKDAQAPPA AGDIVLYRRI AEVKEKERKR TMEEILYALV VQKFVEAGVS LVPALSHSID ASSGRVDQWA EHVEGKLERL
201: HSHEAYEMIE NHLNLILGQR QADGTVAAIS KLRVGQVYAA SVMYGYFLKR VDKRFQLEKS MKSLPWGSED DALNQVMTTD SQPSDQTYSS HPEVESWTSP
301: DLSAGGLGQS VKPSRLRSYV MSFDSDTLQT YATIRSKVAF GIIEKHTEAL FGKPEIVITP EGTVDSSKDE YVRISFSGLR RLILEAVTFG SFLWDVESYV
401: DSRYHFVTN

Best Arabidopsis Sequence Match ( AT3G17800.2 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.