CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82345	Canola	plastid	76.92	19.7
CDX75937	Canola	plastid	77.88	19.57
CDX92162	Canola	plastid	76.92	19.28
CDX95820	Canola	plastid	75.96	19.04
AT3G17800.2	Thale cress	plastid	75.0	18.27
Solyc03g098000.2.1	Tomato	plastid	63.46	17.1
CDY58279	Canola	plastid	65.38	16.0
KRH48705	Soybean	plastid	61.54	15.69
KRH60570	Soybean	plastid	59.62	15.5
KRH39016	Soybean	plastid	61.54	15.46
PGSC0003DMT400083980	Potato	plastid	62.5	15.44
CDY23684	Canola	plastid	59.62	15.23
KRH41876	Soybean	plastid	58.65	15.1
VIT_17s0119g00070.t01	Wine grape	plastid	60.58	15.04
HORVU4Hr1G008300.1	Barley	plastid	58.65	14.95
TraesCS4B01G050500.1	Wheat	plastid	58.65	14.91
TraesCS4D01G050700.1	Wheat	plastid	58.65	14.88
TraesCS4A01G264500.1	Wheat	plastid	58.65	14.77
KXG37708	Sorghum	plastid	58.65	14.7
Zm00001d033787_P001	Maize	plastid	59.62	14.66
Zm00001d013411_P002	Maize	plastid	56.73	14.18
GSMUA_Achr8P30820_001	Banana	mitochondrion	55.77	13.94
Os03t0717900-01	Rice	cytosol	58.65	13.41
GSMUA_Achr1P22120_001	Banana	plastid	49.04	13.28
VIT_15s0024g00690.t01	Wine grape	plastid	43.27	10.95
CDY29940	Canola	plastid	36.54	9.48
CDY35549	Canola	plastid	35.58	9.2
CDX86293	Canola	plastid	22.12	6.76
CDX85350	Canola	plastid	21.15	6.47
CDY34905	Canola	plastid	21.15	6.43
CDY60823	Canola	plastid	21.15	6.25
CDY28064	Canola	plastid	22.12	6.23
CDY24630	Canola	plastid	22.12	6.13

Protein Annotations

EnsemblPlants:CDY19857	EnsemblPlantsGene:GSBRNA2T00009624001	InterPro:At3g17800-like	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	ProteinID:CDY19857
ProteinID:CDY19857.1	UniParc:UPI0004EC94B7	UniProt:A0A078G4E9	MapMan:35.1	:	:

Description

BnaC09g31230DBnaC09g31230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4E9]

Coordinates

chrLK032101:+:23910..24483

Molecular Weight (calculated)

11194.1 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.458

Length

104 amino acids

Sequence
(BLAST)

001: MKILPGGGAD ESKIRIEQPE DMSSHPEVGS FTGGVSAKGF GSEISVMSFD SETLQRYATI RSREAVGIIE KHTEASFGKP EIVSTPQGTG YSPKDEQIKI
101: SFVE

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.