Factsheet for VIT_17s0119g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g08760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	VIT_08s0007g08760.t01	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098000.2.1	Tomato	plastid	66.11	71.76
VIT_15s0024g00690.t01	Wine grape	plastid	66.83	68.13
PGSC0003DMT400083980	Potato	plastid	68.02	67.7
KRH48705	Soybean	plastid	63.01	64.71
KRH39016	Soybean	plastid	63.72	64.49
KRH41876	Soybean	plastid	61.81	64.11
KRH60570	Soybean	plastid	60.86	63.75
CDX92162	Canola	plastid	62.53	63.13
CDX95820	Canola	plastid	62.53	63.13
CDX75937	Canola	plastid	62.05	62.8
Bra001683.1-P	Field mustard	plastid	61.1	62.75
Bra022245.1-P	Field mustard	plastid	62.05	62.65
GSMUA_Achr1P22120_001	Banana	plastid	57.04	62.24
CDX82345	Canola	plastid	60.14	62.07
Bra032255.1-P	Field mustard	plastid	59.43	61.18
CDY23684	Canola	plastid	59.43	61.18
GSMUA_Achr8P30820_001	Banana	mitochondrion	60.62	61.06
AT3G17800.2	Thale cress	plastid	61.81	60.66
CDY19857	Canola	nucleus	15.04	60.58
CDY58279	Canola	plastid	60.86	60.0
AT1G48450.1	Thale cress	plastid	60.38	59.81
HORVU4Hr1G008300.1	Barley	plastid	55.37	56.86
TraesCS4B01G050500.1	Wheat	plastid	55.13	56.48
TraesCS4D01G050700.1	Wheat	plastid	54.65	55.85
KXG37708	Sorghum	plastid	55.13	55.66
TraesCS4A01G264500.1	Wheat	plastid	54.42	55.21
Zm00001d013411_P002	Maize	plastid	53.7	54.09
Zm00001d033787_P001	Maize	plastid	53.94	53.43
Os03t0717900-01	Rice	cytosol	55.85	51.43
VIT_00s2037g00010.t01	Wine grape	cytosol	11.93	46.73
VIT_02s0012g02240.t01	Wine grape	plastid	44.87	46.65
VIT_00s0360g00020.t01	Wine grape	mitochondrion	21.0	35.92

Protein Annotations

EntrezGene:100262899	wikigene:100262899	MapMan:35.1	EMBL:AM476769	InterPro:At3g17800-like	ProteinID:CAN66177
ProteinID:CAN66177.1	ProteinID:CCB58930	ProteinID:CCB58930.1	InterPro:DUF760	UniProt:F6HW66	EMBL:FN596263
EntrezGene:LOC100262899	wikigene:LOC100262899	PFAM:PF05542	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	TIGR:TC60111
UniParc:UPI000210A1C7	ArrayExpress:VIT_17s0119g00070	EnsemblPlantsGene:VIT_17s0119g00070	EnsemblPlants:VIT_17s0119g00070.t01	unigene:Vvi.7068	RefSeq:XP_002267281
RefSeq:XP_002267281.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:13300012..13308117

Molecular Weight (calculated)

46369.0 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.232

Length

419 amino acids

Sequence
(BLAST)

001: MEAVIATVVP SSFGFSRPTD SISRSTVFNV NRSNSVRFPT QFRFFSGWLN LKSGHRNMAF GCKKCTIVRA SASADSSGSA APIAPLQLES PIGQFLSQIL
101: ISHPHLVPAA VEQQLEQLQT DRDAEEHKEE SSASGTELVL YRRIAEVKAN ERKKALEEIL YALVVQKFMD ANVSLIPTIS SSSSDSSDRV DTWPSQDGKL
201: EQLHSPEAYE MIQNHLALIL GNRLGDSTSV AQISKLRVGQ VYAASVMYGY FLKRVDQRFQ LEKTMKILPH ALDGDKGSVQ EALWDKMTPS GSDDSVQTVK
301: SHPEVSSWAG GFTPGGFGHG IKPSRLRNYV MSFDAETLQR YATIRSKEAV SIIEKHTEAL FGRPEIIITP QGTIDSSKDE LIKISFGGLK RLVLEAVTFG
401: SFLWDVESFV DSRYHFVIN

Best Arabidopsis Sequence Match ( AT1G48450.1 )
(BLAST)

001: MDAVAANLFQ SPSLLRQTSE RLIFSTPNCP GFMRISSGPQ FRLRQNSSLK FSRPFQSGTT CVKSRRSFVV KASASGDAST ESIAPLQLKS PVGQFLSQIL
101: VSHPHLVPAA VEQQLEQLQI DRDAEEQSKD ASSVLGTDIV LYRRIAEVKE KERRRALEEI LYALVVQKFM DANVTLVPSI TSSSADPSGR VDTWPTLDGE
201: LERLHSPEVY EMIQNHLSII LKNRTDDLTA VAQISKLGVG QVYAASVMYG YFLKRIDQRF QLEKTMRILP GGSDEGETSI EQAGRDVERN FYEEAEETYQ
301: AVSSNQDVGS FVGGINASGG FSSDMKQSRL KTYVMSFDGE TLQRYATIRS RESVGIIEKH TEALFGRPEI VITPQGTIDS SKDEHIKISF KGLKRLVLEA
401: VTFGSFLWDV ESHVDSRYHF VLN

Arabidopsis Description

Alanine-tRNA ligase, putative (DUF760) [Source:UniProtKB/TrEMBL;Acc:Q9LP80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.