Factsheet for Bra022245.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92162	Canola	plastid	85.78	85.78
Bra001683.1-P	Field mustard	plastid	73.98	75.25
AT3G17800.2	Thale cress	plastid	77.35	75.18
Bra032255.1-P	Field mustard	plastid	66.02	67.32
Solyc03g098000.2.1	Tomato	plastid	60.24	64.77
VIT_17s0119g00070.t01	Wine grape	plastid	62.65	62.05
PGSC0003DMT400083980	Potato	plastid	61.93	61.05
KRH60570	Soybean	plastid	58.55	60.75
GSMUA_Achr1P22120_001	Banana	plastid	55.66	60.16
KRH41876	Soybean	plastid	57.59	59.16
KRH39016	Soybean	plastid	58.55	58.7
KXG37708	Sorghum	plastid	58.31	58.31
HORVU4Hr1G008300.1	Barley	plastid	56.87	57.84
TraesCS4B01G050500.1	Wheat	plastid	56.87	57.7
KRH48705	Soybean	plastid	56.63	57.6
GSMUA_Achr8P30820_001	Banana	mitochondrion	57.59	57.45
TraesCS4D01G050700.1	Wheat	plastid	56.63	57.32
TraesCS4A01G264500.1	Wheat	plastid	56.87	57.14
Zm00001d033787_P001	Maize	plastid	58.07	56.97
Zm00001d013411_P002	Maize	plastid	55.66	55.53
Os03t0717900-01	Rice	cytosol	58.07	52.97
VIT_15s0024g00690.t01	Wine grape	plastid	52.29	52.8
Bra033851.1-P	Field mustard	plastid	39.52	40.9
Bra037475.1-P	Field mustard	plastid	27.95	34.12
Bra029638.1-P	Field mustard	plastid	28.19	31.79
Bra040372.1-P	Field mustard	plastid	26.75	31.62

Protein Annotations

EnsemblPlants:Bra022245.1	EnsemblPlants:Bra022245.1-P	EnsemblPlantsGene:Bra022245	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	SEG:seg	UniParc:UPI000254746F	UniProt:M4E0E8	MapMan:35.1

Description

AT3G17800 (E=2e-192) | mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem

Coordinates

chrA05:+:18870762..18872387

Molecular Weight (calculated)

45569.3 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.280

Length

415 amino acids

Sequence
(BLAST)

001: MDAAATASLI RSSVLPRKAS DNGAGSMFLT ASGPGFTRSG PGRQLRFRQN AFARFSRPLQ SSTARRSFVV KASASNDDAS SSAAKPIAPL QLESPAGQFL
101: SQILVTHPHL VPAAVEQQLE QLQTDRDSEG QNKDASSVPG TDIVLYRRIA ELKENERRKT LEEILYALVV QKFMEANVSL VPSITPSSSD PSGRVDTWPT
201: KVEKLEKLHP SEMYEMIHNH LALILGPRMG DLASVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKSM KLLSGGLDES KTSVEQPENV TFKAVSSHPE
301: VGSFAGGVSA KGFGSEIKPS RLRTYVMSFD SETLQRYATI RSREAVGIIE KHTEALFGKP EIVITPEGTV DSSKDEQIKI SFGGMKRLVL EAVTFGSFLW
401: DVESHVDARY HFVLN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.