Factsheet for Bra029638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
golgi 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009783.1-P
Bra020466.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	Bra009783.1-P	AT5G24660.1	21798944
AT3G07310.1	Bra020466.1-P	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24630	Canola	plastid	95.11	93.33
AT3G07310.1	Thale cress	plastid	83.7	83.7
Bra040372.1-P	Field mustard	plastid	73.37	76.92
Bra037475.1-P	Field mustard	plastid	61.96	67.06
VIT_00s0360g00020.t01	Wine grape	mitochondrion	34.51	51.84
VIT_00s2037g00010.t01	Wine grape	cytosol	14.67	50.47
PGSC0003DMT400022517	Potato	mitochondrion	33.15	49.0
Solyc09g057580.2.1	Tomato	plastid	27.45	47.42
PGSC0003DMT400022519	Potato	plastid	48.91	46.15
KRG99623	Soybean	plastid	46.47	45.97
KRH07429	Soybean	plastid	48.37	45.88
KRH46625	Soybean	plastid	46.47	45.12
KRH66142	Soybean	plastid	47.55	44.53
PGSC0003DMT400053202	Potato	cytosol	34.24	43.6
PGSC0003DMT400084936	Potato	cytosol	34.51	42.47
Solyc06g007550.1.1	Tomato	cytosol	30.98	40.57
Os11t0456100-01	Rice	mitochondrion	39.95	38.08
Solyc06g007560.1.1	Tomato	plastid	36.96	37.57
Zm00001d049232_P002	Maize	mitochondrion	38.59	36.41
TraesCS1A01G390400.1	Wheat	mitochondrion	38.59	36.32
TraesCS1B01G418600.1	Wheat	mitochondrion	38.59	36.32
TraesCS1D01G398600.1	Wheat	mitochondrion	38.04	35.81
HORVU1Hr1G086110.1	Barley	plastid	39.95	35.17
Bra032255.1-P	Field mustard	plastid	32.07	28.99
Bra022245.1-P	Field mustard	plastid	31.79	28.19
Bra001683.1-P	Field mustard	plastid	30.98	27.94
Bra033851.1-P	Field mustard	plastid	29.08	26.68

Protein Annotations

EnsemblPlants:Bra029638.1	EnsemblPlants:Bra029638.1-P	EnsemblPlantsGene:Bra029638	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF2	PFAM:PF05542	SEG:seg	UniParc:UPI0002547FAF	UniProt:M4ELH0	MapMan:35.1

Description

AT3G07310 (E=2e-177) | unknown protein

Coordinates

chrA05:+:22865091..22866640

Molecular Weight (calculated)

41387.5 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.282

Length

368 amino acids

Sequence
(BLAST)

001: MDTCLSNQAA LSFLPSRLRR QSGDGGGGVF SLPAMRKVQY RSMVVVATAG QSRCEPGSSL NAPLELRSSQ GRFLRSVLLN KRQLFHYAAA DELKQLAEER
101: EAALARMALS SGSDEATLHR RIANLKERYC KTAVQDIMYM LIFYKYSEIR VPLAPKLSRC IYNGRLEIWP TKDWELESIH TCDALELIKE HVCAVIGLRV
201: NACVTDNWAT TQIQKLHLRN VYDASILYGY FLKSASLRHQ LECSLSDLHG SGYLKGPVFG SSFTTGTSPI SAKEQLRHYI TGFDAETLRR CARPRTEEAR
301: NLIEKQSLAL FGAEESDETI VTSYSSLKRL VLEAVAFGTF LWDTELYVEG TYKLKENGNA EEQENRSI

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.