Factsheet for Solyc09g057580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022519	Potato	plastid	85.45	46.67
Solyc06g007550.1.1	Tomato	cytosol	37.56	28.47
AT5G48590.1	Thale cress	plastid	44.6	27.62
CDY34905	Canola	plastid	44.13	27.49
AT3G07310.1	Thale cress	plastid	47.42	27.45
Bra029638.1-P	Field mustard	plastid	47.42	27.45
CDX85350	Canola	plastid	43.66	27.35
CDX86293	Canola	plastid	43.66	27.35
Bra037475.1-P	Field mustard	plastid	43.66	27.35
Bra040372.1-P	Field mustard	plastid	45.07	27.35
CDY28064	Canola	plastid	46.95	27.1
CDY60823	Canola	plastid	44.6	26.99
Solyc06g007560.1.1	Tomato	plastid	44.6	26.24
CDY24630	Canola	plastid	46.01	26.13
PGSC0003DMT400022517	Potato	mitochondrion	29.58	25.3
KRH07429	Soybean	plastid	45.07	24.74
KRH66142	Soybean	plastid	43.66	23.66
KRH46625	Soybean	plastid	41.31	23.22
KRG99623	Soybean	plastid	38.03	21.77
Os11t0456100-01	Rice	mitochondrion	37.56	20.73
VIT_00s0360g00020.t01	Wine grape	mitochondrion	23.0	20.0
Zm00001d049232_P002	Maize	mitochondrion	36.15	19.74
TraesCS1B01G418600.1	Wheat	mitochondrion	35.68	19.44
TraesCS1D01G398600.1	Wheat	mitochondrion	35.68	19.44
TraesCS1A01G390400.1	Wheat	mitochondrion	35.21	19.18
HORVU1Hr1G086110.1	Barley	plastid	37.09	18.9
Solyc03g098000.2.1	Tomato	plastid	27.23	15.03
Solyc08g076090.2.1	Tomato	nucleus, plastid	25.35	13.43
VIT_00s2037g00010.t01	Wine grape	cytosol	1.41	2.8

Protein Annotations

EnsemblPlants:Solyc09g057580.2.1	EnsemblPlantsGene:Solyc09g057580.2	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil	PANTHER:PTHR31808
PANTHER:PTHR31808:SF2	PFAM:PF05542	SEG:seg	UniParc:UPI000276B366	UniProt:K4CTF0	MapMan:35.1

Description

No Description!

Coordinates

chr9:-:49839076..49845386

Molecular Weight (calculated)

23899.9 Da

IEP (calculated)

7.738

GRAVY (calculated)

-0.094

Length

213 amino acids

Sequence
(BLAST)

001: MDCGLSYTKI SLHQSLPLAV KTCLSSSTCF LSNNSSFGTS SVGFRRSLFV VATGSSSKCE FGGLNAPLEP ATPTGRLLST LLLNDRKYFH VAVQKQLEKL
101: ANERDEAVAR MNLSLGTDEA FLHRRIAEVK ELECQTSVED IMYMLISYKF SGIRVHLIPR LSKCMYNGRL EIWPCKDWEL ESIHSCEVLE MVREHLTSVL
201: GWKEKSNVAK EVA

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.