Factsheet for Solyc08g076090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024037	Potato	plastid	87.81	87.81
VIT_02s0012g02240.t01	Wine grape	plastid	60.95	60.79
GSMUA_Achr8P14670_001	Banana	cytosol	46.77	57.49
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.97	56.4
KRH39607	Soybean	golgi	56.47	55.64
Bra033851.1-P	Field mustard	plastid	53.98	54.11
CDY29940	Canola	plastid	53.73	53.87
CDY35549	Canola	plastid	53.73	53.73
AT1G32160.1	Thale cress	nucleus, plastid	53.98	53.45
TraesCS2D01G443500.1	Wheat	plastid	47.26	48.47
Os04t0596300-01	Rice	plastid	48.51	48.15
EES12774	Sorghum	plastid	46.27	46.27
Zm00001d026211_P001	Maize	plastid	47.26	45.78
Solyc03g098000.2.1	Tomato	plastid	40.05	41.71
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	46.02	37.45
Solyc06g007550.1.1	Tomato	cytosol	18.66	26.69
Solyc06g007560.1.1	Tomato	plastid	23.13	25.69
Solyc09g057580.2.1	Tomato	plastid	13.43	25.35

Protein Annotations

EnsemblPlants:Solyc08g076090.2.1	EnsemblPlantsGene:Solyc08g076090.2	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil	PANTHER:PTHR31808
PANTHER:PTHR31808:SF6	PFAM:PF05542	SEG:seg	UniParc:UPI000276BCBB	UniProt:K4CMX6	MapMan:35.1

Description

No Description!

Coordinates

chr8:-:60133987..60138114

Molecular Weight (calculated)

44567.1 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.259

Length

402 amino acids

Sequence
(BLAST)

001: MSVMFADVSV VLPSAAGGLK LSNAFSDSKF LLSPSFSKSS PSSSVPRLGL GLGKAQTRSW KIRATASGSS GGDLVPVAPV QLESAVGQFL AQMLQTHPHL
101: LPAAIEQQLD NLQNERDAQL KENQSSTKDV LQKRIAEVKE KERRKILEEI LYCLIVHKFV ENDISMIPKI SETSDPTGNV GYWPNQEQKL ESVHSPDAFE
201: MIISHITIVL GERAVGPLDS IVQMSKIKLG KLYAASIMYG YFLKRVDERY QLERSVSKPP ESFQISTNPD EPAAPRQLWD PDSLIEIYPE DGDREGFAVS
301: DIEGKPERLR SYVMYLDADT LQRYATLRSK EAVTVIEKQT QALFGRPDIK VTGDGTLDVS NDEVLSVTYS GLTMLVLEAV SFGSFLWETE GYVESKYHII
401: NS

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.