Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29940 | Canola | plastid | 80.3 | 81.3 |
| Bra033851.1-P | Field mustard | plastid | 79.8 | 80.8 |
| CDY35549 | Canola | plastid | 79.56 | 80.35 |
| VIT_02s0012g02240.t01 | Wine grape | plastid | 56.65 | 57.07 |
| GSMUA_Achr8P14670_001 | Banana | cytosol | 44.58 | 55.35 |
| PGSC0003DMT400024037 | Potato | plastid | 53.45 | 53.98 |
| Solyc08g076090.2.1 | Tomato | nucleus, plastid | 53.45 | 53.98 |
| KRH74317 | Soybean | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.45 | 53.45 |
| KRH39607 | Soybean | golgi | 53.2 | 52.94 |
| Os04t0596300-01 | Rice | plastid | 45.07 | 45.19 |
| EES12774 | Sorghum | plastid | 44.09 | 44.53 |
| TraesCS2D01G443500.1 | Wheat | plastid | 42.86 | 44.39 |
| Zm00001d026211_P001 | Maize | plastid | 45.07 | 44.1 |
| AT3G17800.2 | Thale cress | plastid | 40.39 | 38.41 |
| HORVU2Hr1G102880.1 | Barley | cytosol, nucleus, plastid | 44.58 | 36.64 |
| AT1G48450.1 | Thale cress | plastid | 37.19 | 35.7 |
| AT3G07310.1 | Thale cress | plastid | 26.11 | 28.8 |
| AT5G48590.1 | Thale cress | plastid | 23.89 | 28.2 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840108 | ProteinID:AAG23441.1 | ProteinID:AEE31442.1 | ArrayExpress:AT1G32160 | EnsemblPlantsGene:AT1G32160 |
| RefSeq:AT1G32160 | TAIR:AT1G32160 | RefSeq:AT1G32160-TAIR-G | EnsemblPlants:AT1G32160.1 | TAIR:AT1G32160.1 | EMBL:AY037196 |
| EMBL:AY087896 | InterPro:At3g17800-like | EMBL:BT002680 | InterPro:DUF760 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| RefSeq:NP_564389.1 | PFAM:PF05542 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31808 | PANTHER:PTHR31808:SF6 | UniProt:Q9FVR1 | UniParc:UPI000004831A |
| SEG:seg | : | : | : | : | : |
Description
At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
Coordinates
chr1:+:11568654..11570438
Molecular Weight (calculated)
45870.3 Da
IEP (calculated)
5.520
GRAVY (calculated)
-0.484
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.