CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026211_P001	Maize	plastid	84.83	82.17
Os04t0596300-01	Rice	plastid	78.11	77.53
TraesCS2D01G443500.1	Wheat	plastid	71.39	73.21
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	66.92	54.45
GSMUA_Achr8P14670_001	Banana	cytosol	44.03	54.13
VIT_02s0012g02240.t01	Wine grape	plastid	49.5	49.38
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.77	46.31
PGSC0003DMT400024037	Potato	plastid	46.27	46.27
Solyc08g076090.2.1	Tomato	nucleus, plastid	46.27	46.27
KRH39607	Soybean	golgi	46.02	45.34
CDY29940	Canola	plastid	45.02	45.14
CDY35549	Canola	plastid	44.78	44.78
Bra033851.1-P	Field mustard	plastid	44.53	44.64
AT1G32160.1	Thale cress	nucleus, plastid	44.53	44.09
KXG37708	Sorghum	plastid	39.55	38.31

Protein Annotations

EnsemblPlants:EES12774	EnsemblPlantsGene:SORBI_3006G200500	EntrezGene:8071101	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF6	PFAM:PF05542	ProteinID:EES12774	ProteinID:EES12774.1	RefSeq:XP_002448446.1
SEG:seg	unigene:Sbi.2885	UniParc:UPI0001A87453	UniProt:C5YF33	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:55198944..55202407

Molecular Weight (calculated)

44860.5 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.346

Length

402 amino acids

Sequence
(BLAST)

001: MPAWAEAALV LGSPSPATAT ASSTTSSCGV RPRAAVESGR LLCKGFPCTI RSKAGFQIHN YRTRTFKIKA KAEPGDGYTR LAPLRFESPS GQLLVQILQS
101: HPHLIPATVD QQLENLQSEK TAQSEEASKV PQDLLYKRIA EVKEKERQNA LEEIIYCWII YRFMDNDISM TSALSPGGGP VRDISALPNQ EDKLQSIHSA
201: DAFEMIQNHL NLIMGEKIAA PPDTVVEISN LNLGKLYAAS IMYGYFLKRV DERFQLEKTM KTLPPNPKQQ IVFENLQPNP FWDMESLVQI TPDGEEISLD
301: DEGSNPNKLK SYVSKLDADT LQRYATIRSK EAVSLIEKQT QALFGRPDIK VLDDGSVNAK DGRMVTITFT ELNHLVLEAV TFGSFLWEAE SYVESKYHFV
401: NS

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.