CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39607	Soybean	golgi	91.63	91.18
VIT_02s0012g02240.t01	Wine grape	plastid	65.02	65.51
GSMUA_Achr8P14670_001	Banana	cytosol	47.54	59.02
PGSC0003DMT400024037	Potato	plastid	56.65	57.21
Solyc08g076090.2.1	Tomato	nucleus, plastid	56.4	56.97
CDY29940	Canola	plastid	54.93	55.61
Bra033851.1-P	Field mustard	plastid	54.43	55.11
CDY35549	Canola	plastid	54.19	54.73
AT1G32160.1	Thale cress	nucleus, plastid	53.45	53.45
Os04t0596300-01	Rice	plastid	48.28	48.4
TraesCS2D01G443500.1	Wheat	plastid	45.57	47.19
EES12774	Sorghum	plastid	46.31	46.77
Zm00001d026211_P001	Maize	plastid	46.55	45.54
KRH41876	Soybean	plastid	43.35	43.56
KRH60570	Soybean	plastid	42.36	43.0
KRH39016	Soybean	plastid	42.61	41.79
KRH48705	Soybean	plastid	41.38	41.18
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	45.57	37.45
KRH07429	Soybean	plastid	28.33	29.64
KRH66142	Soybean	plastid	28.08	29.01
KRG99623	Soybean	plastid	25.86	28.23
KRH46625	Soybean	plastid	25.86	27.7

Protein Annotations

EMBL:ACUP02000016	EnsemblPlants:KRH74317	EnsemblPlantsGene:GLYMA_01G012400	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF6	PFAM:PF05542	ProteinID:KRH74317	ProteinID:KRH74317.1	UniParc:UPI00023373D8	UniProt:K7K168
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1197820..1201968

Molecular Weight (calculated)

45657.4 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.269

Length

406 amino acids

Sequence
(BLAST)

001: MLVSGAISDV LVVLPPSASL RLPEFRHLHA FTVSDAKGFL SGGFLKSCPS SYNPKHYNEL YNFRARGLVA RASADPRDNL VPFAPLQFES PVGQLLEQIS
101: NTHPHLLPAA IDQQLENLQT ARDAQNESSD SSLDSLYKRI AEVKEKEKRT TLEEILYCSI VHKFLENNIS MIPKISATSD PTGRVDLWPN QELKLEGVHS
201: PEAFEMIQSH LSLVLGDRLV GPLQTVVQIS KIKLGKLYAA SIMYGYFLKR IDERFQLERS MGTLPKDFGK AKSFDEPSPG IKLWDPDSLI IVHDYDNDSD
301: HMDTDEGRSF RLRAYVMQLD AETLQRLATV RSKEAISLIE KQTQALFGRP DIRVSEDGSI ETSNDELLSL TFSGLTMLVL EALAFGSFLW DKENYVESKY
401: PFLDID

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.