CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH33290
KRH72015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	KRH33290	AT2G41680.1	21798944
AT1G48450.1	KRH72015	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48705	Soybean	plastid	89.13	90.44
KRH41876	Soybean	plastid	65.22	66.83
KRH60570	Soybean	plastid	64.01	66.25
VIT_17s0119g00070.t01	Wine grape	plastid	64.49	63.72
Solyc03g098000.2.1	Tomato	plastid	57.49	61.66
CDY19857	Canola	nucleus	15.46	61.54
CDX82345	Canola	plastid	59.42	60.59
Bra001683.1-P	Field mustard	plastid	59.66	60.54
GSMUA_Achr1P22120_001	Banana	plastid	54.83	59.11
CDX75937	Canola	plastid	58.94	58.94
CDX95820	Canola	plastid	58.7	58.55
CDX92162	Canola	plastid	58.7	58.55
Bra022245.1-P	Field mustard	plastid	58.7	58.55
PGSC0003DMT400083980	Potato	plastid	59.42	58.43
CDY23684	Canola	plastid	57.0	57.99
Bra032255.1-P	Field mustard	plastid	57.0	57.99
GSMUA_Achr8P30820_001	Banana	mitochondrion	57.97	57.69
AT3G17800.2	Thale cress	plastid	58.94	57.14
AT1G48450.1	Thale cress	plastid	57.97	56.74
HORVU4Hr1G008300.1	Barley	plastid	55.56	56.37
CDY58279	Canola	plastid	57.49	56.0
TraesCS4B01G050500.1	Wheat	plastid	55.31	55.99
TraesCS4D01G050700.1	Wheat	plastid	55.07	55.61
VIT_15s0024g00690.t01	Wine grape	plastid	54.83	55.23
KXG37708	Sorghum	plastid	55.31	55.18
TraesCS4A01G264500.1	Wheat	plastid	54.83	54.96
Zm00001d033787_P001	Maize	plastid	54.83	53.66
Zm00001d013411_P002	Maize	plastid	53.62	53.37
Os03t0717900-01	Rice	cytosol	56.76	51.65
KRH39607	Soybean	golgi	42.03	42.65
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.79	42.61
KRH46625	Soybean	plastid	26.09	28.5
KRG99623	Soybean	plastid	25.36	28.23
KRH07429	Soybean	plastid	26.09	27.84
KRH66142	Soybean	plastid	25.6	26.97

Protein Annotations

EMBL:ACUP02005905	EnsemblPlants:KRH39016	EnsemblPlantsGene:GLYMA_09G171900	EntrezGene:100802697	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	PFAM:PF05542	ProteinID:KRH39014.1	ProteinID:KRH39015.1	ProteinID:KRH39016
ProteinID:KRH39016.1	SEG:seg	UniParc:UPI0002338BB3	UniProt:I1L420	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:39656558..39660392

Molecular Weight (calculated)

45527.3 Da

IEP (calculated)

7.901

GRAVY (calculated)

-0.212

Length

414 amino acids

Sequence
(BLAST)

001: MEAAATATAT VLTPPSAPPR PSAFLGRPSA LAFRSNLRFS TKLSTSVSFS KQGHARHRVG SKRGFVVRAA SFTPESSEPT SKIAPLKLES PIGQFLSQIL
101: ISHPHLVPAA VEQQLEQFQT DCDGDKQKKE PSASGTDLVL YRRIAEVKAK ERRTALEEIL YALVVQKFMD ANISLIPSLT PNHSGQVDSW PSEDGKLEEL
201: HSPEAYEMIQ NHLALILGNR LGDSTSVAQI SKIRVGQVYA ASIMYGYFLK WVVQRFQLEK TMKILPNGAE ENSIQHTVVD DSRISGGDGR SHVMSHPEVS
301: TLPGGGISSG GFGYGSKVSR LRTYVMSFDS ETLQRYATIR SKEALSIIEK HTEALFGRPE IVVTPEGVID SLTDESIKIS FSGLKRLVLE AITFGSFLWD
401: VESYVDSRYH FVLN

Best Arabidopsis Sequence Match ( AT1G48450.1 )
(BLAST)

001: MDAVAANLFQ SPSLLRQTSE RLIFSTPNCP GFMRISSGPQ FRLRQNSSLK FSRPFQSGTT CVKSRRSFVV KASASGDAST ESIAPLQLKS PVGQFLSQIL
101: VSHPHLVPAA VEQQLEQLQI DRDAEEQSKD ASSVLGTDIV LYRRIAEVKE KERRRALEEI LYALVVQKFM DANVTLVPSI TSSSADPSGR VDTWPTLDGE
201: LERLHSPEVY EMIQNHLSII LKNRTDDLTA VAQISKLGVG QVYAASVMYG YFLKRIDQRF QLEKTMRILP GGSDEGETSI EQAGRDVERN FYEEAEETYQ
301: AVSSNQDVGS FVGGINASGG FSSDMKQSRL KTYVMSFDGE TLQRYATIRS RESVGIIEKH TEALFGRPEI VITPQGTIDS SKDEHIKISF KGLKRLVLEA
401: VTFGSFLWDV ESHVDSRYHF VLN

Arabidopsis Description

Alanine-tRNA ligase, putative (DUF760) [Source:UniProtKB/TrEMBL;Acc:Q9LP80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.