Factsheet for GSMUA_Achr8P30820_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr8P09560_001
GSMUA_Achr8P09570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	GSMUA_Achr11P...	AT2G41680.1	21798944
AT1G48450.1	GSMUA_Achr8P09560_001	AT2G41680.1	21798944
AT1G48450.1	GSMUA_Achr8P09570_001	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P22120_001	Banana	plastid	71.15	77.08
Solyc03g098000.2.1	Tomato	plastid	60.34	65.03
KXG37708	Sorghum	plastid	63.22	63.37
TraesCS4B01G050500.1	Wheat	plastid	61.78	62.84
HORVU4Hr1G008300.1	Barley	plastid	61.54	62.75
TraesCS4D01G050700.1	Wheat	plastid	61.78	62.68
PGSC0003DMT400083980	Potato	plastid	62.5	61.76
TraesCS4A01G264500.1	Wheat	plastid	61.3	61.74
Zm00001d033787_P001	Maize	plastid	62.5	61.47
VIT_17s0119g00070.t01	Wine grape	plastid	61.06	60.62
Zm00001d013411_P002	Maize	plastid	59.86	59.86
KRH48705	Soybean	plastid	58.17	59.31
KRH41876	Soybean	plastid	56.73	58.42
CDX82345	Canola	plastid	56.97	58.37
CDX95820	Canola	plastid	58.17	58.31
KRH60570	Soybean	plastid	56.01	58.25
CDX92162	Canola	plastid	57.93	58.07
KRH39016	Soybean	plastid	57.69	57.97
AT3G17800.2	Thale cress	plastid	59.38	57.85
CDY23684	Canola	plastid	56.49	57.74
Bra032255.1-P	Field mustard	plastid	56.49	57.74
Bra022245.1-P	Field mustard	plastid	57.45	57.59
CDX75937	Canola	plastid	56.73	57.0
Bra001683.1-P	Field mustard	plastid	55.53	56.62
Os03t0717900-01	Rice	cytosol	61.78	56.48
CDY58279	Canola	plastid	57.21	56.0
CDY19857	Canola	nucleus	13.94	55.77
AT1G48450.1	Thale cress	plastid	56.49	55.56
VIT_15s0024g00690.t01	Wine grape	plastid	50.72	51.34
GSMUA_Achr8P14670_001	Banana	cytosol	37.98	48.32

Protein Annotations

EnsemblPlants:GSMUA_Achr8P30820_001	EnsemblPlants:GSMUA_Achr8T30820_001	EnsemblPlantsGene:GSMUA_Achr8G30820_001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	SEG:seg	UniParc:UPI000294C807	UniProt:M0TV34	MapMan:35.1

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G30820_001]

Coordinates

chr8:+:32727073..32728991

Molecular Weight (calculated)

46445.3 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.349

Length

416 amino acids

Sequence
(BLAST)

001: MEAASGLRSP RCLRKAPGFS SRSCLLAIHG TNSSLSFDPK PRYSTLWLKS DSSISLSKQG RRLFGARRSI GVRASSSSSE SSLPIAPLQL ESPIGQFLSQ
101: ILVSHPHLLP AAVDQQLEQL QTDREAEKNK EEPAPSGTDI VLYRRIAEVK ANERRTALEE ILYALVIQKF VEADVSLVPA ISQSTDPSSR VDHWPPQDEK
201: LERLHSPEAY EMIKNHLALI LGQRLSDSNS VAPISKLRIG QVYAASVMYG YFLKRVDQRF QLEKSMKTLP WGSDKEEIAI KQAMPDESRP FTESRISNPE
301: LPSWSSPGFN KGAVGNGAKS SLLRSYVMSF DSDTLQRYVT IRSKEAFTII EKHTEALFGR PEIVITPQGT IDSSKDELIK ISFGGLRRLI LEAITFGSFL
401: WDVEGYVDSR YHFVTN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.