Factsheet for GSMUA_Achr8P09570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P13230_001
GSMUA_Achr3P08100_001
GSMUA_Achr3P31620_001
GSMUA_Achr4P32570_001
GSMUA_Achr5P24690_001
GSMUA_Achr6P24690_001
GSMUA_Achr6P25720_001
GSMUA_Achr7P01840_001
GSMUA_Achr7P07540_001
GSMUA_Achr8P09560_001
GSMUA_Achr8P09570_001
GSMUA_Achr9P18700_001
GSMUA_Achr9P18710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	GSMUA_Achr3P08100_001	AT1G02870.1	21798944
AT2G41680.1	GSMUA_Achr4P32570_001	AT1G49850.1	21798944
AT2G41680.1	GSMUA_Achr6P24690_001	AT1G49850.1	21798944
AT2G41680.1	GSMUA_Achr1P13230_001	AT1G76760.1	21798944
AT2G41680.1	GSMUA_Achr6P25720_001	AT1G76760.1	21798944
AT2G41680.1	GSMUA_Achr11P...	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr8P09560_001	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr8P09570_001	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr5P24690_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr7P01840_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr7P07540_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr3P31620_001	AT4G10930.1	21798944
AT2G41680.1	GSMUA_Achr9P18700_001	AT5G40440.1	21798944
AT2G41680.1	GSMUA_Achr9P18710_001	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G023170.1	Barley	cytosol	76.57	27.8
VIT_08s0007g08760.t01	Wine grape	plastid	81.14	26.84
KRH33290	Soybean	nucleus	78.86	26.59
KRH72015	Soybean	nucleus	78.86	26.44
CDY35405	Canola	plastid	76.57	26.22
Bra004639.1-P	Field mustard	plastid	77.71	26.1
Bra000234.1-P	Field mustard	plastid	76.0	26.03
CDY22534	Canola	plastid	76.0	26.03
KXG36845	Sorghum	plastid	77.71	25.95
Os07t0657900-02	Rice	plastid	76.0	25.83
TraesCS2B01G154700.1	Wheat	plastid	76.57	25.77
PGSC0003DMT400060907	Potato	plastid	79.43	25.6
CDX79923	Canola	mitochondrion, plastid	77.71	25.47
Solyc10g080080.1.1	Tomato	plastid	78.86	25.41
AT2G41680.1	Thale cress	plastid	76.57	25.33
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	81.14	25.09
CDY23835	Canola	plastid	77.71	25.05
Zm00001d022381_P016	Maize	plastid	78.29	24.77
PGSC0003DMT400070103	Potato	plastid	30.29	24.65
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.57	22.45
GSMUA_Achr9P27590_001	Banana	mitochondrion	44.57	22.03
Solyc04g016010.2.1	Tomato	nucleus	65.71	21.42
PGSC0003DMT400070106	Potato	cytosol	2.86	2.16
GSMUA_Achr8P09560_001	Banana	cytosol	2.86	2.16

Protein Annotations

MapMan:10.5.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G09570_001	EnsemblPlants:GSMUA_Achr8P09570_001
EnsemblPlants:GSMUA_Achr8T09570_001	InterPro:IPR036188	UniProt:M0TP10	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
UniParc:UPI0002954235	:	:	:	:	:

Description

Thioredoxin reductase NTRC [Source:GMGC_GENE;Acc:GSMUA_Achr8G09570_001]

Coordinates

chr8:-:6717238..6721618

Molecular Weight (calculated)

19629.4 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.341

Length

175 amino acids

Sequence
(BLAST)

001: MTTTEVENFP GFPDGITGPD LMDRIRRQAE RWGAELFQED VEFIDVQHNP FIVHSSERKV KCHSLIIATG ATAKRLRLPR EDEFWSRGIS ACAICDGASP
101: LFKGQVLAVV GGGDTATEEA LYLTKYARHV HLLVRRNQLR ASKAMQDRLI MANVSQSTQQ SEYHSALQYR SCGCC

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.