Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 72.07 | 80.08 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 68.28 | 75.0 |
| EER93250 | Sorghum | cytosol, plastid | 73.45 | 73.2 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 73.45 | 72.95 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 73.1 | 72.85 |
| TraesCS5A01G456500.1 | Wheat | plastid | 73.1 | 72.6 |
| Zm00001d013042_P001 | Maize | plastid | 72.41 | 72.16 |
| Zm00001d034527_P001 | Maize | plastid | 71.38 | 70.41 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 73.45 | 69.16 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 66.55 | 67.72 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 68.97 | 66.67 |
| KRH71412 | Soybean | cytosol | 66.55 | 64.12 |
| KRH68710 | Soybean | plastid | 65.17 | 63.64 |
| Solyc01g097790.2.1 | Tomato | cytosol | 65.52 | 63.55 |
| KRG95548 | Soybean | cytosol | 65.86 | 63.46 |
| TraesCS5B01G465500.1 | Wheat | plastid | 73.45 | 63.39 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 65.52 | 63.33 |
| KRH32026 | Soybean | cytosol, plastid | 65.52 | 63.33 |
| PGSC0003DMT400057872 | Potato | cytosol | 64.83 | 62.88 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 64.14 | 61.79 |
| KRG92651 | Soybean | cytosol | 63.79 | 61.67 |
| KRG96949 | Soybean | cytosol, plastid | 64.83 | 61.44 |
| Os07t0572300-01 | Rice | plastid | 58.62 | 59.86 |
| KRH67230 | Soybean | cytosol | 63.45 | 58.79 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 60.69 | 58.09 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 57.59 | 57.79 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 60.34 | 57.76 |
| CDY52485 | Canola | plastid | 57.93 | 57.34 |
| Bra009991.1-P | Field mustard | plastid | 57.93 | 57.34 |
| CDX86191 | Canola | plastid | 57.93 | 57.34 |
| AT3G04860.1 | Thale cress | plastid | 56.9 | 57.09 |
| HORVU2Hr1G038060.1 | Barley | plastid | 54.83 | 56.79 |
| Zm00001d021869_P001 | Maize | plastid | 55.52 | 56.69 |
| CDY00013 | Canola | cytosol, plastid | 56.9 | 55.93 |
| TraesCS2D01G204300.1 | Wheat | plastid | 54.14 | 55.48 |
| TraesCS2B01G223900.1 | Wheat | plastid | 53.79 | 55.12 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 53.79 | 54.55 |
| TraesCS2A01G196200.1 | Wheat | plastid | 52.41 | 53.71 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 53.1 | 53.66 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 52.07 | 53.55 |
| CDY30020 | Canola | cytosol, plastid | 50.34 | 51.77 |
| CDY21108 | Canola | plastid | 50.0 | 51.42 |
| Bra040118.1-P | Field mustard | plastid | 49.66 | 51.06 |
| OQU90135 | Sorghum | plastid | 55.86 | 47.65 |
| Bra036119.1-P | Field mustard | mitochondrion | 56.9 | 43.19 |
| GSMUA_AchrUn_... | Banana | plastid | 39.66 | 40.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.28 | 39.78 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 56.9 | 37.16 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 34.48 | 36.23 |
| GSMUA_Achr10P... | Banana | cytosol | 38.62 | 35.22 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 36.9 | 35.08 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 36.55 | 34.64 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 34.83 | 34.35 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 34.83 | 34.24 |
| GSMUA_Achr11P... | Banana | plastid | 34.14 | 34.14 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 33.45 | 33.68 |
| GSMUA_Achr9P13220_001 | Banana | mitochondrion, peroxisome, plastid | 31.72 | 24.21 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plastid | 32.41 | 23.1 |
| GSMUA_Achr5P22830_001 | Banana | cytosol, nucleus, peroxisome | 28.97 | 21.59 |
| GSMUA_Achr3P04550_001 | Banana | plastid | 18.28 | 19.92 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P24690_001 | EnsemblPlants:GSMUA_Achr5T24690_001 | EnsemblPlantsGene:GSMUA_Achr5G24690_001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | UniParc:UPI00029525B0 | UniProt:M0T1E4 | MapMan:35.2 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G24690_001]
Coordinates
chr5:-:25992784..25993656
Molecular Weight (calculated)
32393.3 Da
IEP (calculated)
8.482
GRAVY (calculated)
-0.114
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE SGVQVSKESS SGAGKTAQNL VTCLYQAQLL GRRRVINVTW SKNLMGQGLS VGIDDLGNQC PPCRVEIKPW LFSKRKGSRT LDMEGSKIDI
101: FWDLSAAKFG PGPEPLEGFY VALVFDHQMV LLLGNLIKEA YQRTNARPPP SSAVLVAKTE HIYGKKLYST KAQFCDNGQF HDVAIECDTV GLKDPCLEIC
201: IDKKRVMQIK RLAWKFRGNQ TILVDGLPVE VFWDVHSWLF GSPTGNAVFM FQTCLSAEKL LSWSTSSQVL REPQLQGLGF SLILHAWKIE
101: FWDLSAAKFG PGPEPLEGFY VALVFDHQMV LLLGNLIKEA YQRTNARPPP SSAVLVAKTE HIYGKKLYST KAQFCDNGQF HDVAIECDTV GLKDPCLEIC
201: IDKKRVMQIK RLAWKFRGNQ TILVDGLPVE VFWDVHSWLF GSPTGNAVFM FQTCLSAEKL LSWSTSSQVL REPQLQGLGF SLILHAWKIE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.