Factsheet for GSMUA_Achr6P35790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20270_001
GSMUA_Achr3P03050_001
GSMUA_Achr5P24690_001
GSMUA_Achr7P01840_001
GSMUA_Achr7P07540_001
GSMUA_Achr8P07610_001
GSMUA_Achr8P29560_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	GSMUA_Achr10P...	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr11P...	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr2P20270_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr3P03050_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr8P07610_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr8P29560_001	AT2G27770.1	21798944
AT4G26100.1	GSMUA_Achr5P24690_001	AT5G28150.1	21798944
AT4G26100.1	GSMUA_Achr7P01840_001	AT5G28150.1	21798944
AT4G26100.1	GSMUA_Achr7P07540_001	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P32290_001	Banana	cytosol	27.43	88.44
KRH12426	Soybean	cytosol	41.35	81.67
GSMUA_Achr5P09640_001	Banana	cytosol	80.8	81.32
GSMUA_Achr4P09160_001	Banana	cytosol	80.38	81.06
GSMUA_Achr4P08690_001	Banana	cytosol	79.75	79.92
GSMUA_Achr7P24210_001	Banana	cytosol	80.17	79.17
GSMUA_AchrUn_...	Banana	cytosol	77.43	77.59
HORVU3Hr1G066800.6	Barley	cytosol	76.58	76.58
EES01354	Sorghum	cytosol	75.74	76.38
TraesCS3B01G281100.2	Wheat	cytosol	75.53	75.69
TraesCS3D01G252000.2	Wheat	cytosol	75.53	75.69
GSMUA_Achr7P13580_001	Banana	cytosol	74.89	75.53
TraesCS3A01G251600.2	Wheat	cytosol	75.32	75.48
Bra035646.1-P	Field mustard	cytosol	56.75	74.72
GSMUA_Achr8P24940_001	Banana	cytosol	76.58	73.63
CDY49859	Canola	cytosol	71.73	73.12
CDX96430	Canola	cytosol	71.52	72.9
Bra016039.1-P	Field mustard	cytosol	71.52	72.9
Bra008043.1-P	Field mustard	cytosol	71.31	72.69
AT1G72710.1	Thale cress	cytosol	70.89	72.26
CDY53866	Canola	cytosol	67.93	72.2
CDX72938	Canola	cytosol	71.31	71.46
AT4G26100.1	Thale cress	cytosol	66.88	70.44
CDX94377	Canola	cytosol	68.35	70.43
AT5G57015.1	Thale cress	cytosol	64.56	70.34
CDY11892	Canola	cytosol	63.71	70.23
Bra013949.1-P	Field mustard	cytosol	68.14	70.22
CDX88601	Canola	cytosol	63.5	70.0
Bra006839.1-P	Field mustard	cytosol	63.5	70.0
CDY38255	Canola	cytosol	63.08	69.53
CDY54387	Canola	cytosol	63.5	69.52
Bra002771.1-P	Field mustard	cytosol	63.29	69.28
CDY20695	Canola	cytosol	60.97	69.14
Zm00001d011696_P002	Maize	cytosol	64.35	68.85
CDY32908	Canola	cytosol	60.76	68.74
Zm00001d043693_P002	Maize	cytosol	63.5	64.87
CDY69293	Canola	cytosol	47.05	64.08
GSMUA_Achr8P19730_001	Banana	cytosol	39.03	62.08
GSMUA_Achr3P04680_001	Banana	cytosol	59.92	60.43
GSMUA_AchrUn_...	Banana	cytosol	59.07	60.34
GSMUA_Achr10P...	Banana	cytosol	59.28	60.3
GSMUA_Achr5P14540_001	Banana	cytosol	58.23	58.35
GSMUA_Achr3P32300_001	Banana	endoplasmic reticulum, plasma membrane	47.26	57.88
GSMUA_Achr7P14470_001	Banana	cytosol	52.53	57.51
GSMUA_Achr9P13290_001	Banana	cytosol	59.92	56.8
GSMUA_Achr2P19240_001	Banana	cytosol	50.21	54.84
CDX82685	Canola	cytosol, nucleus, vacuole	23.0	35.05
GSMUA_Achr9P00060_001	Banana	cytosol	15.82	33.04
GSMUA_AchrUn_...	Banana	cytosol	24.89	31.55
GSMUA_Achr9P25780_001	Banana	cytosol	31.43	25.78
GSMUA_Achr9P06110_001	Banana	cytosol	32.28	25.21
GSMUA_Achr2P15650_001	Banana	cytosol	31.86	24.96
GSMUA_Achr6P26340_001	Banana	cytosol	31.43	24.59
GSMUA_Achr11P...	Banana	cytosol	31.01	24.5
GSMUA_Achr4P01010_001	Banana	plastid	31.43	21.78
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	30.8	21.73
GSMUA_Achr8P20360_001	Banana	cytosol	31.22	20.73
GSMUA_Achr6P11480_001	Banana	plastid	30.17	20.37
GSMUA_AchrUn_...	Banana	cytosol	4.64	11.96
GSMUA_Achr9P00070_001	Banana	extracellular	5.49	11.76

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G35790_001
EnsemblPlants:GSMUA_Achr6P35790_001	EnsemblPlants:GSMUA_Achr6T35790_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0TD22	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF162	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296C1C7	SEG:seg

Description

Casein kinase I isoform delta-like [Source:GMGC_GENE;Acc:GSMUA_Achr6G35790_001]

Coordinates

chr6:-:33892806..33906991

Molecular Weight (calculated)

53179.1 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.529

Length

474 amino acids

Sequence
(BLAST)

001: MEPRVGDKFR LGRKIGSGSF GEIYLGINIQ TNEEVAIKLE NVKTKHPQLL YESKLYKILQ GGTGIPNVRW YGIEGEYNVL VMDLLGPSLE DLFNFCGRKF
101: SLKTVLMLAD QMINRVEFVH SKYFLHRDIK PDNFLMGLGR RANQVYIIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SVNTHLGIEQ SRRDDMESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYEKISE RKVATSIEAL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RLFRDLFIHE GFQFDYVFDW TVLKSQQSQN
301: ASAPPRPIIS GVGPSSGLVP ATANDKHSGG EEGRISGWPA ADSPHLARVP PPAVHAGTLA KQKTPLGNEP SVNKEAAFSS STFLGQSSGS SRRAVVSSSQ
401: DMWGSGADQS CTHTTEQSPR TICKVSSSEG NSPFDSADPR CISSGRNLAN TKNYEFTLKG IRGLSFDHDK RIRY

Best Arabidopsis Sequence Match ( AT2G19470.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTDVQ TNEEVAIKLE SVKTAHPQLS YESRIYRVLQ GGTGIPNMKW YGVEGDYNVL VMDLLGPSLE DLFSYCKRQF
101: SLKTVLMLAD QMINRLEFIH SKSYLHRDIK PDNFLMGLGR RANQVYIIDY GLAKKYRDSS THRHIPYREN KSLIGTPRYA SLNTHLGIEQ SRRDDIESLG
201: YILMYFLKGS LPWQGLKAGN KKQKYDKISE KKVSTSIETL CRGHPTEFAS YFHYCRSLRF DDKPDYAYLK RLFRNLFIRE GFQFDFVFDW TVYKYQQSQS
301: GNPQPRPHDG GVGTSSGLNP AVGNSEKRPD VPNQRTNPDF TLKQKDKNGN DSAIAKDKLL PGSLNLGRSE GSSSRRVVDT SSREPFSGGS DNANYETALK
401: GIDGLRINNN AGDETAATPQ SNGDDVEPQS KAL

Arabidopsis Description

CKL5Casein kinase 1-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.