Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- plastid 2
- mitochondrion 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04860.1 | GSMUA_Achr7P27170_001 | AT1G05410.1 | 21798944 |
| AT3G04860.1 | GSMUA_AchrUn_... | AT4G32190.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr3P32300_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr4P08690_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr4P09160_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr5P09640_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr6P35790_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr7P24210_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_Achr8P24940_001 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | GSMUA_AchrUn_... | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 75.86 | 75.0 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 80.08 | 72.07 |
| EER93250 | Sorghum | cytosol, plastid | 74.71 | 67.01 |
| Zm00001d013042_P001 | Maize | plastid | 74.33 | 66.67 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 73.56 | 65.98 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 72.8 | 65.07 |
| Zm00001d034527_P001 | Maize | plastid | 73.18 | 64.97 |
| TraesCS5A01G456500.1 | Wheat | plastid | 72.41 | 64.73 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 67.82 | 62.11 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 70.5 | 61.33 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 70.5 | 61.33 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 72.03 | 61.04 |
| KRG95548 | Soybean | cytosol | 70.11 | 60.8 |
| KRH32026 | Soybean | cytosol, plastid | 69.73 | 60.67 |
| KRH71412 | Soybean | cytosol | 69.35 | 60.13 |
| Solyc01g097790.2.1 | Tomato | cytosol | 67.05 | 58.53 |
| PGSC0003DMT400057872 | Potato | cytosol | 67.05 | 58.53 |
| KRH68710 | Soybean | plastid | 65.9 | 57.91 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 65.13 | 56.48 |
| TraesCS5B01G465500.1 | Wheat | plastid | 72.41 | 56.25 |
| KRG92651 | Soybean | cytosol | 64.37 | 56.0 |
| KRG96949 | Soybean | cytosol, plastid | 65.52 | 55.88 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 64.75 | 55.78 |
| KRH67230 | Soybean | cytosol | 66.67 | 55.59 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 64.37 | 55.45 |
| CDY52485 | Canola | plastid | 62.07 | 55.29 |
| CDX86191 | Canola | plastid | 61.3 | 54.61 |
| Bra009991.1-P | Field mustard | plastid | 61.3 | 54.61 |
| Os07t0572300-01 | Rice | plastid | 59.39 | 54.58 |
| AT3G04860.1 | Thale cress | plastid | 59.77 | 53.98 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 59.39 | 53.63 |
| CDY00013 | Canola | cytosol, plastid | 59.77 | 52.88 |
| HORVU2Hr1G038060.1 | Barley | plastid | 56.32 | 52.5 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 55.56 | 51.42 |
| TraesCS2B01G223900.1 | Wheat | plastid | 55.56 | 51.24 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 55.94 | 51.05 |
| TraesCS2D01G204300.1 | Wheat | plastid | 55.17 | 50.88 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 55.94 | 50.87 |
| Zm00001d021869_P001 | Maize | plastid | 55.17 | 50.7 |
| TraesCS2A01G196200.1 | Wheat | plastid | 54.41 | 50.18 |
| CDY21108 | Canola | plastid | 54.02 | 50.0 |
| Bra040118.1-P | Field mustard | plastid | 53.64 | 49.65 |
| CDY30020 | Canola | cytosol, plastid | 52.49 | 48.58 |
| OQU90135 | Sorghum | plastid | 57.85 | 44.41 |
| Bra036119.1-P | Field mustard | mitochondrion | 60.54 | 41.36 |
| GSMUA_AchrUn_... | Banana | plastid | 39.46 | 36.65 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 60.54 | 35.59 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 36.78 | 32.65 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 36.78 | 32.54 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.48 | 32.26 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 37.16 | 31.8 |
| GSMUA_Achr10P... | Banana | cytosol | 38.31 | 31.45 |
| GSMUA_Achr11P... | Banana | plastid | 34.1 | 30.69 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 32.18 | 30.43 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 35.25 | 30.07 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 32.57 | 29.51 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plastid | 34.87 | 22.36 |
| GSMUA_Achr9P13220_001 | Banana | mitochondrion, peroxisome, plastid | 32.18 | 22.11 |
| GSMUA_Achr5P22830_001 | Banana | cytosol, nucleus, peroxisome | 31.03 | 20.82 |
| GSMUA_Achr3P04550_001 | Banana | plastid | 18.01 | 17.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P07540_001 | EnsemblPlants:GSMUA_Achr7T07540_001 | EnsemblPlantsGene:GSMUA_Achr7G07540_001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | UniParc:UPI00029592EE | UniProt:M0TFJ4 | MapMan:35.2 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G07540_001]
Coordinates
chr7:+:5637991..5639005
Molecular Weight (calculated)
29339.3 Da
IEP (calculated)
8.778
GRAVY (calculated)
-0.110
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE SGVQVSDSSS GASRAAQNLV TCLYQVQLLG RSCVINLEIK PWLFSKRKGS KILEVENSKI AVSWDLSAAK FGPGPEPIEG FYIAVVFHLE
101: MVLLLGDLTK EAYRKTNASP SPSNAVFIAK REHIYGKKVY STKAQFCDNG QSHEVAIECD TIGLKDPYLE IRIDRKRVMQ IKRLAWKFRG NQTILIDGLP
201: VEVFWDVHSW LFGPSSGNAV FMFQTCLSAE KLLPWSASQN FRESRLQGLG FSLVLYAWKN E
101: MVLLLGDLTK EAYRKTNASP SPSNAVFIAK REHIYGKKVY STKAQFCDNG QSHEVAIECD TIGLKDPYLE IRIDRKRVMQ IKRLAWKFRG NQTILIDGLP
201: VEVFWDVHSW LFGPSSGNAV FMFQTCLSAE KLLPWSASQN FRESRLQGLG FSLVLYAWKN E
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.