Factsheet for GSMUA_Achr4P09160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20270_001
GSMUA_Achr3P03050_001
GSMUA_Achr5P24690_001
GSMUA_Achr7P01840_001
GSMUA_Achr7P07540_001
GSMUA_Achr8P07610_001
GSMUA_Achr8P29560_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	GSMUA_Achr10P...	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr11P...	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr2P20270_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr3P03050_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr8P07610_001	AT2G27770.1	21798944
AT1G72710.1	GSMUA_Achr8P29560_001	AT2G27770.1	21798944
AT4G26100.1	GSMUA_Achr5P24690_001	AT5G28150.1	21798944
AT4G26100.1	GSMUA_Achr7P01840_001	AT5G28150.1	21798944
AT4G26100.1	GSMUA_Achr7P07540_001	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P32290_001	Banana	cytosol	29.15	93.2
GSMUA_Achr4P08690_001	Banana	cytosol	88.72	88.16
GSMUA_Achr7P24210_001	Banana	cytosol	88.51	86.67
KRH12426	Soybean	cytosol	43.4	85.0
GSMUA_AchrUn_...	Banana	cytosol	84.04	83.51
EES01354	Sorghum	cytosol	82.34	82.34
GSMUA_Achr8P24940_001	Banana	cytosol	86.17	82.15
HORVU3Hr1G066800.6	Barley	cytosol	82.34	81.65
GSMUA_Achr5P09640_001	Banana	cytosol	81.7	81.53
TraesCS3D01G252000.2	Wheat	cytosol	81.28	80.76
TraesCS3B01G281100.2	Wheat	cytosol	81.28	80.76
TraesCS3A01G251600.2	Wheat	cytosol	81.06	80.55
GSMUA_Achr6P35790_001	Banana	cytosol	81.06	80.38
Bra035646.1-P	Field mustard	cytosol	60.0	78.33
GSMUA_Achr7P13580_001	Banana	cytosol	77.87	77.87
CDX96430	Canola	cytosol	75.96	76.77
Bra016039.1-P	Field mustard	cytosol	75.96	76.77
AT1G72710.1	Thale cress	cytosol	75.74	76.56
CDY11892	Canola	cytosol	69.57	76.05
CDY49859	Canola	cytosol	75.11	75.91
CDX88601	Canola	cytosol	69.36	75.81
Bra006839.1-P	Field mustard	cytosol	69.36	75.81
Zm00001d011696_P002	Maize	cytosol	71.28	75.62
Bra008043.1-P	Field mustard	cytosol	74.68	75.48
AT5G57015.1	Thale cress	cytosol	69.79	75.4
CDX72938	Canola	cytosol	75.74	75.26
AT4G26100.1	Thale cress	cytosol	71.7	74.89
CDY53866	Canola	cytosol	71.06	74.89
CDY38255	Canola	cytosol	68.51	74.88
CDY54387	Canola	cytosol	68.94	74.83
Bra002771.1-P	Field mustard	cytosol	68.72	74.6
CDY20695	Canola	cytosol	65.32	73.44
Bra013949.1-P	Field mustard	cytosol	71.7	73.26
CDX94377	Canola	cytosol	71.49	73.04
CDY32908	Canola	cytosol	65.11	73.03
Zm00001d043693_P002	Maize	cytosol	69.57	70.47
CDY69293	Canola	cytosol	49.36	66.67
GSMUA_Achr3P32300_001	Banana	endoplasmic reticulum, plasma membrane	52.98	64.34
GSMUA_Achr3P04680_001	Banana	cytosol	62.55	62.55
GSMUA_AchrUn_...	Banana	cytosol	61.28	62.07
GSMUA_Achr10P...	Banana	cytosol	61.49	62.02
GSMUA_Achr8P19730_001	Banana	cytosol	38.94	61.41
GSMUA_Achr5P14540_001	Banana	cytosol	60.85	60.47
GSMUA_Achr9P13290_001	Banana	cytosol	62.98	59.2
GSMUA_Achr7P14470_001	Banana	cytosol	53.19	57.74
GSMUA_Achr2P19240_001	Banana	cytosol	51.91	56.22
CDX82685	Canola	cytosol, nucleus, vacuole	23.62	35.69
GSMUA_Achr9P00060_001	Banana	cytosol	15.53	32.16
GSMUA_AchrUn_...	Banana	cytosol	25.11	31.55
GSMUA_Achr9P25780_001	Banana	cytosol	31.7	25.78
GSMUA_Achr9P06110_001	Banana	cytosol	32.55	25.21
GSMUA_Achr2P15650_001	Banana	cytosol	32.34	25.12
GSMUA_Achr6P26340_001	Banana	cytosol	31.7	24.59
GSMUA_Achr11P...	Banana	cytosol	31.06	24.33
GSMUA_Achr4P01010_001	Banana	plastid	31.7	21.78
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	30.85	21.58
GSMUA_Achr8P20360_001	Banana	cytosol	31.49	20.73
GSMUA_Achr6P11480_001	Banana	plastid	30.43	20.37
GSMUA_Achr9P00070_001	Banana	extracellular	5.32	11.31
GSMUA_AchrUn_...	Banana	cytosol	4.26	10.87

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G09160_001
EnsemblPlants:GSMUA_Achr4P09160_001	EnsemblPlants:GSMUA_Achr4T09160_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0SMD3	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF162	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002965490	SEG:seg

Description

Casein kinase I isoform delta-like [Source:GMGC_GENE;Acc:GSMUA_Achr4G09160_001]

Coordinates

chr4:+:6655001..6660770

Molecular Weight (calculated)

52574.3 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.587

Length

470 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKILQ GGTGIPNVRW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFVH SKSFLHRDIK PDNFIMGLGR RANQVYIIDF GLAKKYRDTS THQHIPYREN KNLTGTARYA SVNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYEKISE KKVATSIEAL CRGYPSEFAS YFHYCRSLRF EDKPDYGYLK RLFRDLFIRE GFQFDYVFDW TILKYQQSQI
301: AGAPARAIGA SAGPSSGLAP AVANDRQSGE EGRASGWLAM DPSRRGRVTP PPVNASSSSK QKAPVGNDTS ASKDAMFSSS TFMGRSSGSS RRAAVSSSRD
401: MVGPDTDQSR TRTAEASPVT FHKVSSAQRN SPAEHKHTSS GRKPSAIKNY ESTLKGIEGL NFDSEERNQL

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.