CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86191
CDY00013
CDY52485
CDY59819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26100.1	CDX86191	AT5G28150.1	21798944
AT4G26100.1	CDY00013	AT5G28150.1	21798944
AT4G26100.1	CDY52485	AT5G28150.1	21798944
AT4G26100.1	CDY59819	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013949.1-P	Field mustard	cytosol	99.78	99.78
CDY69293	Canola	cytosol	75.43	99.71
AT4G26100.1	Thale cress	cytosol	89.13	91.11
CDY54387	Canola	cytosol	81.3	86.37
CDY38255	Canola	cytosol	80.65	86.28
CDY20695	Canola	cytosol	77.17	84.93
CDY11892	Canola	cytosol	79.13	84.65
CDY32908	Canola	cytosol	76.96	84.49
CDX88601	Canola	cytosol	78.7	84.19
KRH12426	Soybean	cytosol	42.83	82.08
VIT_11s0016g01950.t01	Wine grape	cytosol	77.61	75.32
Solyc03g121820.2.1	Tomato	cytosol, nucleus	75.22	73.62
VIT_09s0002g01740.t01	Wine grape	cytosol	75.22	73.46
PGSC0003DMT400006625	Potato	cytosol	75.22	73.46
PGSC0003DMT400012385	Potato	cytosol	74.13	73.02
Solyc06g062790.2.1	Tomato	cytosol, nucleus	73.7	72.59
CDY49859	Canola	cytosol	73.26	72.47
CDX70305	Canola	cytosol	46.3	71.96
Solyc05g016410.2.1	Tomato	cytosol, nucleus	73.26	71.86
CDY53866	Canola	cytosol	69.57	71.75
GSMUA_Achr4P08690_001	Banana	cytosol	73.7	71.67
CDX96430	Canola	cytosol	72.39	71.61
GSMUA_Achr4P09160_001	Banana	cytosol	73.04	71.49
PGSC0003DMT400082747	Potato	cytosol	73.04	71.19
Solyc07g040720.2.1	Tomato	nucleus	72.83	70.97
CDY10056	Canola	cytosol	26.96	70.86
EES01354	Sorghum	cytosol	72.17	70.64
CDX72938	Canola	cytosol	72.39	70.4
GSMUA_AchrUn_...	Banana	cytosol	71.96	69.98
HORVU3Hr1G066800.6	Barley	cytosol	71.96	69.83
GSMUA_Achr7P24210_001	Banana	cytosol	72.39	69.38
TraesCS3B01G281100.2	Wheat	cytosol	71.3	69.34
TraesCS3D01G252000.2	Wheat	cytosol	71.3	69.34
TraesCS3A01G251600.2	Wheat	cytosol	71.09	69.13
GSMUA_Achr6P35790_001	Banana	cytosol	70.43	68.35
GSMUA_Achr5P09640_001	Banana	cytosol	69.13	67.52
GSMUA_Achr8P24940_001	Banana	cytosol	68.91	64.3
Zm00001d011696_P002	Maize	cytosol	60.87	63.21
Zm00001d043693_P002	Maize	cytosol	61.09	60.56
CDY32520	Canola	cytosol	59.78	60.31
CDY66573	Canola	cytosol	56.74	60.28
CDY18127	Canola	cytosol	56.3	59.82
CDY10089	Canola	cytosol	58.91	59.56
CDY14235	Canola	cytosol	58.91	58.66
CDY12062	Canola	cytosol	56.52	58.17
CDY12761	Canola	cytosol	56.3	58.07
CDX97446	Canola	cytosol	58.7	58.06
CDY54479	Canola	cytosol	59.78	57.65
CDY49413	Canola	cytosol	56.74	57.62
CDY13126	Canola	cytosol	59.78	57.53
CDX90256	Canola	cytosol	56.3	57.3
CDY36972	Canola	cytosol	59.57	57.2
CDY35198	Canola	cytosol	58.91	57.17
CDY38379	Canola	cytosol	58.48	56.75
CDY06860	Canola	cytosol	51.09	56.35
CDY51704	Canola	cytosol	58.7	56.13
CDX92883	Canola	cytosol	58.7	56.13
CDY35229	Canola	cytosol	50.43	55.64
CDY50929	Canola	cytosol	50.87	55.58
CDX92899	Canola	cytosol	50.87	55.58
CDY14873	Canola	cytosol	56.96	55.16
CDY56353	Canola	cytosol	57.17	55.02
CDY43608	Canola	cytosol	57.61	54.98
CDX89823	Canola	cytosol	55.43	54.96
CDY32954	Canola	cytosol	57.39	54.77
CDY69732	Canola	cytosol	55.22	54.62
CDY53188	Canola	cytosol	55.43	54.6
CDY18233	Canola	cytosol	55.43	54.03
GSMUA_Achr3P32300_001	Banana	endoplasmic reticulum, plasma membrane	40.43	48.06
CDX82685	Canola	cytosol, nucleus, vacuole	23.91	35.37
CDY11509	Canola	cytosol	29.35	23.89
CDX76739	Canola	cytosol	30.65	23.5
CDY21505	Canola	cytosol	31.09	23.25
CDY23629	Canola	cytosol	26.09	22.86
CDY55141	Canola	cytosol	29.57	21.52
CDY02641	Canola	cytosol	31.74	21.28
CDY51243	Canola	cytosol	31.52	21.2
CDX70801	Canola	cytosol	31.52	21.2
CDX75726	Canola	mitochondrion	29.57	20.86
CDX97505	Canola	mitochondrion	29.57	20.83
CDX82524	Canola	mitochondrion	29.57	20.8
CDY38493	Canola	cytosol	30.87	20.58
CDY25451	Canola	cytosol	30.87	20.58
CDY21155	Canola	cytosol	30.43	19.89
CDY51730	Canola	cytosol	29.57	19.88
CDY42890	Canola	cytosol	30.22	19.86
CDY29971	Canola	cytosol	30.22	19.77
CDY53253	Canola	plastid	31.52	19.03
CDY50866	Canola	cytosol	30.22	17.42
CDX94378	Canola	cytosol	8.48	8.99
CDY69292	Canola	cytosol	8.26	8.76

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:A0A078DZN5	EnsemblPlants:CDX94377	ProteinID:CDX94377	ProteinID:CDX94377.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00157496001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE27E9	SEG:seg

Description

BnaC01g18070DCasein kinase 1-like protein 1 [Source:Projected from Arabidopsis thaliana (AT4G26100) UniProtKB/Swiss-Prot;Acc:P42158]

Coordinates

chrLK031881:+:589074..592163

Molecular Weight (calculated)

52277.8 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.626

Length

460 amino acids

Sequence
(BLAST)

001: MESRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE SVKTKHPQLL YESKLYKILQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKSVLMLAD QMINRVEFFH SKSFLHRDLK PDNFLMGLGR RANQVYIIDF GLAKKYRDST THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YILMYFLKGS LPWQGLKAGN KKQKYERISE KKVSTSIEVL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: TAPPSRNLNP AVGTSAALPP GVSNIDRYTG EEEGRPVGYS HMESSRRRAS GTLDHSGNLS NQQTSSFNRE SMMPSSSMFA QSAGSSRRVA AVSSRDNLLS
401: GEEFQRSHRT GDVSRGGVIS RNSPVEAGKR SSSSRRHYES AIKGIDNLQV SSDDKFHHHH

Best Arabidopsis Sequence Match ( AT4G26100.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIH TNEELAIKLE NVKTKHPQLL YESKLYRILQ GGTGVPNVKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKSVLMLAD QMINRVEFFH SKSFLHRDLK PDNFLMGLGR RANQVYIIDF GLAKKYRDST THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YILMYFLKGS LPWQGLKAGT KKQKYERISE KKVSTSIEAL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: TAPPSRALNP AVGTSAALPP GISNIDRYTG EEEGRPHMES SRRRVSGALD NSGNISNQPT SSSARDSMIP SSSLFAQSAG SSRRVTAVSG SRDNFPGSEE
401: LLQRSRTGDV SRGVIPRNSP GEAGKSTRRH YESVVKGIDN LQVSDEHHPH

Arabidopsis Description

CKL1CKL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.