Factsheet for Solyc05g016410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc06g074500.1.1
Solyc11g066930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	Solyc06g074500.1.1	AT2G27770.1	21798944
AT1G72710.1	Solyc11g066930.1.1	AT2G27770.1	21798944
AT4G26100.1	Solyc01g097790.2.1	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g040720.2.1	Tomato	nucleus	88.49	87.92
Bra035646.1-P	Field mustard	cytosol	61.62	80.28
Solyc03g121820.2.1	Tomato	cytosol, nucleus	77.83	77.66
CDX96430	Canola	cytosol	76.97	77.63
Bra016039.1-P	Field mustard	cytosol	76.97	77.63
AT5G57015.1	Thale cress	cytosol	71.22	76.78
CDY49859	Canola	cytosol	76.12	76.77
AT1G72710.1	Thale cress	cytosol	76.12	76.77
CDY11892	Canola	cytosol	70.36	76.74
EES01354	Sorghum	cytosol	76.76	76.6
Bra006839.1-P	Field mustard	cytosol	70.15	76.51
CDX88601	Canola	cytosol	70.15	76.51
CDY53866	Canola	cytosol	72.71	76.46
Bra008043.1-P	Field mustard	cytosol	75.69	76.34
CDX72938	Canola	cytosol	76.97	76.32
HORVU3Hr1G066800.6	Barley	cytosol	76.33	75.53
AT4G26100.1	Thale cress	cytosol	72.28	75.33
CDY54387	Canola	cytosol	69.3	75.06
TraesCS3D01G252000.2	Wheat	cytosol	75.69	75.05
TraesCS3B01G281100.2	Wheat	cytosol	75.69	75.05
CDY38255	Canola	cytosol	68.66	74.88
TraesCS3A01G251600.2	Wheat	cytosol	75.48	74.84
Bra002771.1-P	Field mustard	cytosol	69.08	74.83
CDY20695	Canola	cytosol	66.31	74.4
GSMUA_Achr7P13580_001	Banana	cytosol	74.41	74.26
CDY32908	Canola	cytosol	66.31	74.22
Solyc06g062790.2.1	Tomato	cytosol, nucleus	73.77	74.09
CDX94377	Canola	cytosol	71.86	73.26
Bra013949.1-P	Field mustard	cytosol	71.86	73.26
Solyc09g090230.1.1	Tomato	cytosol, nucleus	17.48	70.69
Zm00001d011696_P002	Maize	cytosol	65.46	69.3
CDY69293	Canola	cytosol	49.68	66.95
Solyc12g007280.1.1	Tomato	cytosol	52.88	66.13
Zm00001d043693_P002	Maize	cytosol	63.54	64.22
Solyc08g066870.2.1	Tomato	cytosol, nucleus	50.96	62.57
Solyc09g066440.2.1	Tomato	cytosol	60.55	61.74
Solyc06g008320.2.1	Tomato	cytosol, nucleus	60.13	61.71
Solyc06g083830.2.1	Tomato	cytosol	59.06	60.35
Solyc06g053560.2.1	Tomato	cytosol	56.5	59.95
Solyc09g090250.2.1	Tomato	nucleus	57.36	57.97
Solyc09g090240.1.1	Tomato	cytosol	23.67	56.92
CDX82685	Canola	cytosol, nucleus, vacuole	23.45	35.37
Solyc08g066410.1.1	Tomato	cytosol	20.26	27.54
Solyc12g100310.1.1	Tomato	nucleus	29.21	22.76
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	31.56	21.39
Solyc12g095830.1.1	Tomato	nucleus	31.34	20.85
Solyc01g006120.2.1	Tomato	nucleus	30.28	20.82
Solyc10g080700.1.1	Tomato	nucleus	31.34	20.73
Solyc08g066400.1.1	Tomato	cytosol	11.09	15.62

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4BZ03
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc05g016410.2	EnsemblPlants:Solyc05g016410.2.1	UniParc:UPI0002766E50	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:16183759..16196457

Molecular Weight (calculated)

52587.6 Da

IEP (calculated)

10.023

GRAVY (calculated)

-0.585

Length

469 amino acids

Sequence
(BLAST)

001: METRVGNKYR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYRILQ GGTGIPNVRW YGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH SKSFLHRDIK PDNFLMGLGR RANQVYIIDF GLAKKYRDTS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKVSTSIEAL CRGYPTEFAS YFHFCRSLRF EDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQI
301: AAPPSRPLGT GAGTSSGMPP VIPSAERPSG EEEGRQLADA SRRRYSGPLV NAGSLSKQKS PLRNDSTSKN AMLPSSTFLG RSSGSLRRGL VSGSRETSSV
401: GNGSDPTRSR APEASPATMH KISSGQRISP LVGSSDPTKH ASSVPGVKNY ESTLKGIESL HFDEEEKGH

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.