Factsheet for Solyc06g008320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065568	Potato	cytosol	97.81	97.81
Solyc09g066440.2.1	Tomato	cytosol	92.12	91.52
Solyc06g083830.2.1	Tomato	cytosol	91.03	90.63
VIT_07s0005g03710.t01	Wine grape	cytosol	86.87	86.68
Solyc06g053560.2.1	Tomato	cytosol	77.9	80.54
Solyc09g090250.2.1	Tomato	nucleus	81.62	80.39
Solyc09g090230.1.1	Tomato	cytosol, nucleus	20.35	80.17
GSMUA_Achr3P04680_001	Banana	cytosol	76.59	74.47
GSMUA_Achr10P...	Banana	cytosol	75.71	74.25
GSMUA_Achr5P14540_001	Banana	cytosol	76.81	74.21
GSMUA_AchrUn_...	Banana	cytosol	75.27	74.14
KXG26713	Sorghum	cytosol	73.52	73.85
Os04t0514800-01	Rice	cytosol	73.3	73.79
Os02t0622100-01	Rice	nucleus	74.4	73.43
TraesCS6B01G256000.1	Wheat	cytosol	73.74	72.32
TraesCS6A01G225600.1	Wheat	cytosol	73.74	72.32
HORVU6Hr1G058230.6	Barley	cytosol	73.52	72.1
TraesCS6D01G210400.1	Wheat	cytosol	73.52	72.1
TraesCS5B01G428600.3	Wheat	cytosol	74.62	71.79
Zm00001d025853_P001	Maize	cytosol	71.77	71.62
KXG38336	Sorghum	cytosol	75.05	71.61
GSMUA_Achr9P13290_001	Banana	cytosol	77.68	71.0
TraesCS5D01G434700.3	Wheat	cytosol	74.4	70.98
TraesCS5A01G426700.2	Wheat	cytosol	73.96	70.56
HORVU5Hr1G103860.19	Barley	cytosol	64.55	70.41
EES05449	Sorghum	cytosol	71.55	70.32
Zm00001d003049_P003	Maize	cytosol	72.43	68.53
Os10t0476300-02	Rice	plasma membrane	70.9	68.21
Zm00001d017261_P006	Maize	cytosol	71.12	66.33
Solyc12g007280.1.1	Tomato	cytosol	52.95	64.53
Zm00001d014038_P003	Maize	cytosol	69.58	63.86
Zm00001d051135_P005	Maize	cytosol	69.15	63.07
Solyc09g090240.1.1	Tomato	cytosol	26.26	61.54
Solyc03g121820.2.1	Tomato	cytosol, nucleus	63.02	61.28
Zm00001d032715_P002	Maize	cytosol	72.65	60.58
Solyc05g016410.2.1	Tomato	cytosol, nucleus	61.71	60.13
Solyc08g066870.2.1	Tomato	cytosol, nucleus	49.89	59.69
Solyc07g040720.2.1	Tomato	nucleus	61.49	59.53
Solyc06g062790.2.1	Tomato	cytosol, nucleus	60.61	59.31
Solyc08g066410.1.1	Tomato	cytosol	20.35	26.96
Solyc12g100310.1.1	Tomato	nucleus	31.95	24.25
Solyc01g006120.2.1	Tomato	nucleus	32.17	21.55
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	32.39	21.39
Solyc12g095830.1.1	Tomato	nucleus	32.82	21.28
Solyc10g080700.1.1	Tomato	nucleus	31.51	20.31
Solyc08g066400.1.1	Tomato	cytosol	11.6	15.92

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4C3L2
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF114	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc06g008320.2	EnsemblPlants:Solyc06g008320.2.1	UniParc:UPI0002766718	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:2193612..2201004

Molecular Weight (calculated)

51766.6 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.654

Length

457 amino acids

Sequence
(BLAST)

001: MDHVVSGRFK LGRKIGSGSF GELYLGVNIQ NGEEVAIKLE SVKTKHPQLH YESKIYMLLQ GGTGIPNLKW FGVEAEYNVM VIDLLGPSLE DLFNYCNRKF
101: TLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYAIDF GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPIEVL CKSYPSEFTS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQIGA
301: SSRGRLPGGS AGLNAGPSAE RPGRTSVGQD IRDRFSGAVE AFSRRNASGT GKHGEHSRQK TSEDMTSSKD VQADSERGRT LRNGSSSKRA AISSSRPSSS
401: GDPTITDSRS SRLVSSNGRV STTHRIHSGI EPKPSPFSRK GTRDDPLRSF EFLSIRK

Best Arabidopsis Sequence Match ( AT4G14340.1 )
(BLAST)

001: MDRNQKMDHV IGGKFKLGRK LGSGSFGELY LGINIQTGEE VAVKLEPVKT RHPQLQYESK IYMFLQGGTG VPHLKWFGVE GEYSCMVIDL LGPSLEDLFN
101: YCKRIFSLKS VLMLADQLIC RVEYMHSRGF LHRDIKPDNF LMGLGRRANQ VYIIDYGLAK KYKDLQTQKH IPYRENKNLT GTARYASVNT HLGIEQSRRD
201: DLESLGYVLM YFLRGSLPWQ GLKAGTKKQK YDKISEKKML TSVETLCKSY PSEFTSYFHY CRSLRFEDKP DYSYLRRLFR DLFIREGYQL DYVFDWTISK
301: YPQIGSSSRP RPTPRPALDP PGPPAERAEK PTVGQDLRGR FTGAIEAFTR RNVSSQGALG DRSRHRSSDD IPSSAKEVHE SRNGSTSKRG VISSTRPGSS
401: AEPSENHSSR LFSSGSRHAT TQRVPQSYES AAAARPGHED AIRNFELLTI GSGKKRK

Arabidopsis Description

CKL11Casein kinase 1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q39050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.