Factsheet for VIT_07s0005g03710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065568	Potato	cytosol	86.9	87.09
PGSC0003DMT400026692	Potato	cytosol	87.34	86.96
Solyc06g008320.2.1	Tomato	cytosol, nucleus	86.68	86.87
Solyc09g066440.2.1	Tomato	cytosol	86.68	86.3
PGSC0003DMT400051696	Potato	cytosol	85.15	84.97
VIT_05s0049g01240.t01	Wine grape	cytosol	86.03	84.91
Solyc06g083830.2.1	Tomato	cytosol	84.93	84.75
GSMUA_Achr10P...	Banana	cytosol	78.6	77.25
GSMUA_AchrUn_...	Banana	cytosol	77.29	76.29
GSMUA_Achr3P04680_001	Banana	cytosol	77.95	75.96
Os02t0622100-01	Rice	nucleus	75.98	75.16
KXG26713	Sorghum	cytosol	74.24	74.73
Os04t0514800-01	Rice	cytosol	74.02	74.67
HORVU6Hr1G058230.6	Barley	cytosol	75.11	73.82
TraesCS6B01G256000.1	Wheat	cytosol	75.11	73.82
TraesCS6A01G225600.1	Wheat	cytosol	75.11	73.82
TraesCS6D01G210400.1	Wheat	cytosol	74.89	73.61
GSMUA_Achr5P14540_001	Banana	cytosol	75.55	73.15
Zm00001d025853_P001	Maize	cytosol	72.27	72.27
GSMUA_Achr9P13290_001	Banana	cytosol	78.6	72.0
TraesCS5B01G428600.3	Wheat	cytosol	73.14	70.53
HORVU5Hr1G103860.19	Barley	cytosol	63.97	69.93
TraesCS5A01G426700.2	Wheat	cytosol	72.93	69.73
TraesCS5D01G434700.3	Wheat	cytosol	72.93	69.73
KXG38336	Sorghum	cytosol	72.93	69.73
EES05449	Sorghum	cytosol	70.52	69.46
Zm00001d003049_P003	Maize	cytosol	73.14	69.36
Zm00001d017261_P006	Maize	cytosol	72.05	67.35
Os10t0476300-02	Rice	plasma membrane	68.34	65.89
Zm00001d051135_P005	Maize	cytosol	69.87	63.87
VIT_09s0002g01740.t01	Wine grape	cytosol	63.76	62.0
Zm00001d014038_P003	Maize	cytosol	67.03	61.65
VIT_11s0016g01950.t01	Wine grape	cytosol	62.88	60.76
VIT_11s0016g03460.t01	Wine grape	cytosol	56.77	60.05
Zm00001d032715_P002	Maize	cytosol	71.18	59.49
VIT_19s0085g00700.t01	Wine grape	cytosol	10.04	38.02
VIT_04s0008g00160.t01	Wine grape	cytosol	33.41	22.01
VIT_09s0002g03680.t01	Wine grape	cytosol	33.41	21.73
VIT_06s0004g01090.t01	Wine grape	nucleus	32.53	20.87
VIT_11s0016g04060.t01	Wine grape	cytosol	31.88	20.86
VIT_08s0007g07420.t01	Wine grape	cytosol	31.88	20.59

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100265228	wikigene:100265228	MapMan:18.4.4.1	EMBL:AM439347	ProteinID:CAN60708
ProteinID:CAN60708.1	ProteinID:CCB60135	ProteinID:CCB60135.1	UniProt:F6HZM0	EMBL:FN596502	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100265228	wikigene:LOC100265228	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF114	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00019839B0	ArrayExpress:VIT_07s0005g03710
EnsemblPlantsGene:VIT_07s0005g03710	EnsemblPlants:VIT_07s0005g03710.t01	unigene:Vvi.16601	RefSeq:XP_002276486	RefSeq:XP_002276486.1	RefSeq:XP_003632430
RefSeq:XP_003632430.1	RefSeq:XP_003632431	RefSeq:XP_003632431.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:6631989..6640372

Molecular Weight (calculated)

51928.7 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.673

Length

458 amino acids

Sequence
(BLAST)

001: MEHVIGGKFK MGRKIGSGSF GELYIGVNVQ SGEEVAIKVE PTKTKHPQLQ YESKLYMLLQ GGTGIPHLKW FGVEGEYNVM VIDLLGPSLE DLFNYCNRKF
101: TLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR RANQVYAIDF GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPIEVL CKSYPSEFTS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQIGA
301: SSRGRHSTGK AGLNAGPSAE RLDRTSGQEI RDRFSGAVET FPRRNAFGSG LHSDHSKNRT SDGVPSSKDV QADSERGRTS RNGSTSKRAL ISSSRPSSSG
401: EPSEGRSSRL VSSSSRMSSS HRIQPGFESK SSSFTRTAAT KGTRDDPLRS FELLSIRK

Best Arabidopsis Sequence Match ( AT4G28540.1 )
(BLAST)

001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK

Arabidopsis Description

CKL6Casein kinase 1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.