Factsheet for PGSC0003DMT400026692

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066440.2.1	Tomato	cytosol	99.13	99.13
PGSC0003DMT400065568	Potato	cytosol	92.17	92.78
PGSC0003DMT400051696	Potato	cytosol	90.65	90.85
VIT_07s0005g03710.t01	Wine grape	cytosol	86.96	87.34
Os04t0514800-01	Rice	cytosol	74.57	75.55
GSMUA_Achr10P...	Banana	cytosol	76.52	75.54
GSMUA_Achr3P04680_001	Banana	cytosol	76.96	75.32
GSMUA_AchrUn_...	Banana	cytosol	75.43	74.78
Os02t0622100-01	Rice	nucleus	74.78	74.3
KXG26713	Sorghum	cytosol	73.48	74.29
GSMUA_Achr5P14540_001	Banana	cytosol	75.87	73.78
TraesCS6B01G256000.1	Wheat	cytosol	73.7	72.75
HORVU6Hr1G058230.6	Barley	cytosol	73.48	72.53
TraesCS6A01G225600.1	Wheat	cytosol	73.48	72.53
TraesCS6D01G210400.1	Wheat	cytosol	73.48	72.53
Zm00001d025853_P001	Maize	cytosol	71.52	71.83
KXG38336	Sorghum	cytosol	74.57	71.61
TraesCS5B01G428600.3	Wheat	cytosol	73.48	71.16
GSMUA_Achr9P13290_001	Banana	cytosol	77.17	71.0
EES05449	Sorghum	cytosol	71.3	70.54
TraesCS5D01G434700.3	Wheat	cytosol	73.26	70.35
TraesCS5A01G426700.2	Wheat	cytosol	72.83	69.94
HORVU5Hr1G103860.19	Barley	cytosol	63.48	69.69
Zm00001d003049_P003	Maize	cytosol	72.17	68.74
Os10t0476300-02	Rice	plasma membrane	70.43	68.21
Zm00001d017261_P006	Maize	cytosol	71.09	66.73
Zm00001d051135_P005	Maize	cytosol	69.35	63.67
Zm00001d014038_P003	Maize	cytosol	68.48	63.25
PGSC0003DMT400006625	Potato	cytosol	63.04	61.57
Zm00001d032715_P002	Maize	cytosol	71.96	60.4
PGSC0003DMT400082747	Potato	cytosol	61.74	60.17
PGSC0003DMT400001003	Potato	cytosol	54.35	59.1
PGSC0003DMT400012385	Potato	cytosol	59.57	58.67
PGSC0003DMT400024850	Potato	cytosol	50.65	54.95
PGSC0003DMT400081865	Potato	cytosol	29.35	21.99
PGSC0003DMT400047803	Potato	cytosol, mitochondrion, nucleus, plastid	31.96	21.34
PGSC0003DMT400075580	Potato	cytosol	31.3	20.4
PGSC0003DMT400060832	Potato	cytosol	31.09	20.17
PGSC0003DMT400010926	Potato	cytosol	7.83	15.72

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102593906	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1ANL0	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400010312	PGSC:PGSC0003DMG400010312
EnsemblPlants:PGSC0003DMT400026692	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF176
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002963A7C
RefSeq:XP_006351659.1	SEG:seg	:	:	:	:

Description

Casein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400010312]

Coordinates

chr9:-:49955839..49964851

Molecular Weight (calculated)

51865.7 Da

IEP (calculated)

10.271

GRAVY (calculated)

-0.616

Length

460 amino acids

Sequence
(BLAST)

001: MDHVVGGKFK LGRKIGSGSF GELYLGVNLQ NGEEVAIKLE SVKTKHPQLH YESKIYMLLS GGTGIPNLKW FGVEGEYNVM VIDLLGPSLE DLFNYCNRKL
101: SLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYAIDF GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPIEVL CKSYPSEFIS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQIGA
301: SSRGRNISGS APLNAVPSAE RPGRTSVGQD IRDRFSGAVG AFSRRNASSS GRHGDHSRNK TSDDIPSSKD VQADSERGRT SRNCSSSRRA AISSSRPSSS
401: GEPTESRSSS RLVSSSGRLS ATQRIHSGAE PKPSLFSRTS VTKGSRDDPL RSFELLSIRK

Best Arabidopsis Sequence Match ( AT4G28540.1 )
(BLAST)

001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK

Arabidopsis Description

CKL6Casein kinase 1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.