Factsheet for PGSC0003DMT400024850

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066870.2.1	Tomato	cytosol, nucleus	85.38	94.76
PGSC0003DMT400001003	Potato	cytosol	67.92	68.09
PGSC0003DMT400065568	Potato	cytosol	55.66	51.64
PGSC0003DMT400012385	Potato	cytosol	56.6	51.39
PGSC0003DMT400051696	Potato	cytosol	55.42	51.2
PGSC0003DMT400006625	Potato	cytosol	56.6	50.96
PGSC0003DMT400026692	Potato	cytosol	54.95	50.65
PGSC0003DMT400082747	Potato	cytosol	56.37	50.64
PGSC0003DMT400081865	Potato	cytosol	27.36	18.89
PGSC0003DMT400060832	Potato	cytosol	29.01	17.35
PGSC0003DMT400047803	Potato	cytosol, mitochondrion, nucleus, plastid	27.83	17.13
PGSC0003DMT400075580	Potato	cytosol	28.3	17.0
PGSC0003DMT400010926	Potato	cytosol	3.54	6.55

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1AKP8	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400009606	PGSC:PGSC0003DMG400009606	EnsemblPlants:PGSC0003DMT400024850
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF97	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296C54E	:

Description

Casein kinase 1 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400009606]

Coordinates

chr8:-:39693434..39702730

Molecular Weight (calculated)

47861.6 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.426

Length

424 amino acids

Sequence
(BLAST)

001: MERIIGEKYK LGRKIGSGSF GVIYLATHIE TFEIVAVKIE NRQTRHPQLL YEAKLYTILQ GGSGIPNIKW RGVDGNDSVL IIDLLGPSLE DLIVHCGRKF
101: SLKTVLMLAD QMITRIEYLH SKGFLHRDIK PDNFLMGLGR KANQVYVIDF GLAKRYRDPT TSRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKADT KKQKYDKIRE KKVSTTIEVL CKSLPVEFAS YLHYCHSLTF DQRPDYGFLK RLFRDLFTRE GYKMDYVFDW TILKYQQTQR
301: SKAQLELPSL HPLSVTTGTG ALPKALNKQG GNIATHLAEA SKQKVSSNFV RGDVSATNLK SDYRTGKNVA FNTSGPSTSL ADAFKRSFPK HEDSIEVGNV
401: GHAHSGKTGA SSSKLHFLSR ISSK

Best Arabidopsis Sequence Match ( AT4G28880.3 )
(BLAST)

001: MERIIGGKYK LGRKIGGGSF GEIFLATHVD TFEIVAVKIE NSKTKHPQLL YEAKLYRILE GGSGIPRIKW FGVDGTENAL VMDLLGPSLE DLFVYCGRKF
101: SPKTVLMLAD QMLTRIEFVH SKGYLHRDIK PDNFLMGLGR KANQVYLIDF GLAKRYRDAN TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAVD KKQKYDKICE KKISTPIEVL CKNHPVEFAS YFHYCHTLTF DQRPDYGFLK RLFRDLFSRE GYEFDYIFDW TIIKYQQAQK
301: SRNQSQAVPG SSNPRAMPVD TSNHRGGPNI SYEAEASERV RSANAIGPSP QINNNTAAGR TPGFDHPVHK NMNMPSTSLS PAGTSKRNVG PETSNSGYGS
401: GNRTGWTSSF MSPEK

Arabidopsis Description

CKL3Ckl3 [Source:UniProtKB/TrEMBL;Acc:A0A178UXY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.