Factsheet for PGSC0003DMT400012385

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018411
PGSC0003DMT400057872

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	PGSC0003DMT400018411	AT2G27770.1	21798944
AT4G26100.1	PGSC0003DMT400057872	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062790.2.1	Tomato	cytosol, nucleus	97.0	97.0
KRH12421	Soybean	cytosol	32.98	92.22
GSMUA_Achr3P32290_001	Banana	cytosol	28.27	89.8
PGSC0003DMT400006625	Potato	cytosol	87.15	86.41
VIT_09s0002g01740.t01	Wine grape	cytosol	81.16	80.47
Bra035646.1-P	Field mustard	cytosol	60.39	78.33
KRH19210	Soybean	nucleus	74.52	76.65
KRH02686	Soybean	nucleus	74.52	76.65
Bra016039.1-P	Field mustard	cytosol	76.02	76.34
CDX96430	Canola	cytosol	76.02	76.34
KRH23272	Soybean	cytosol	76.66	75.85
KRH10045	Soybean	nucleus	76.45	75.8
AT5G57015.1	Thale cress	cytosol	70.45	75.63
Bra006839.1-P	Field mustard	cytosol	69.59	75.58
CDX88601	Canola	cytosol	69.59	75.58
KRH37421	Soybean	nucleus	73.66	75.44
CDY11892	Canola	cytosol	69.38	75.35
CDY49859	Canola	cytosol	74.95	75.27
CDY54387	Canola	cytosol	69.59	75.06
AT1G72710.1	Thale cress	cytosol	74.73	75.05
PGSC0003DMT400082747	Potato	cytosol	75.8	75.0
KRH44105	Soybean	cytosol	76.45	75.0
CDX72938	Canola	cytosol	75.8	74.84
Bra008043.1-P	Field mustard	cytosol	74.52	74.84
Bra002771.1-P	Field mustard	cytosol	69.38	74.83
CDY53866	Canola	cytosol	71.31	74.66
CDY38255	Canola	cytosol	68.74	74.65
EES01354	Sorghum	cytosol	74.95	74.47
CDX94377	Canola	cytosol	73.02	74.13
CDY32908	Canola	cytosol	66.38	73.99
CDY20695	Canola	cytosol	66.17	73.92
Bra013949.1-P	Field mustard	cytosol	72.81	73.91
HORVU3Hr1G066800.6	Barley	cytosol	74.95	73.84
AT4G26100.1	Thale cress	cytosol	71.09	73.78
TraesCS3D01G252000.2	Wheat	cytosol	74.52	73.57
TraesCS3B01G281100.2	Wheat	cytosol	74.52	73.57
TraesCS3A01G251600.2	Wheat	cytosol	74.3	73.36
KRH47076	Soybean	cytosol	57.39	71.09
CDY69293	Canola	cytosol	50.96	68.39
Zm00001d011696_P002	Maize	cytosol	62.74	66.14
Zm00001d043693_P002	Maize	cytosol	62.31	62.72
KRH12422	Soybean	cytosol, nucleus	38.54	62.5
PGSC0003DMT400065568	Potato	cytosol	58.89	60.18
PGSC0003DMT400026692	Potato	cytosol	58.67	59.57
PGSC0003DMT400051696	Potato	cytosol	57.82	58.82
PGSC0003DMT400001003	Potato	cytosol	53.1	58.63
PGSC0003DMT400024850	Potato	cytosol	51.39	56.6
CDX82685	Canola	cytosol, nucleus, vacuole	24.2	36.33
PGSC0003DMT400047803	Potato	cytosol, mitochondrion, nucleus, plastid	31.91	21.63
PGSC0003DMT400081865	Potato	cytosol	28.27	21.5
PGSC0003DMT400060832	Potato	cytosol	31.48	20.73
PGSC0003DMT400075580	Potato	cytosol	30.84	20.4
PGSC0003DMT400010926	Potato	cytosol	6.0	12.23

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102590454	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1A165	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400004854	PGSC:PGSC0003DMG400004854
EnsemblPlants:PGSC0003DMT400012385	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296A9BB
RefSeq:XP_006357391.1	:	:	:	:	:

Description

Casein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400004854]

Coordinates

chr6:-:48625060..48633010

Molecular Weight (calculated)

52307.4 Da

IEP (calculated)

10.260

GRAVY (calculated)

-0.534

Length

467 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGGNVQ TNEEVAIKLE NVKTKHPQLL YEAKLYKILQ GGTGVPNLKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKM
101: SLKTVLMLAD QMINRVEFVH AKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: FVLMYFLRGS LPWQGLKAGN KKQKYERISE KKVSTSIETL CRGYPAEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: ANIPSRALGG TAGPSSGMPH GLANVEKKSG AEEGRPTGWS SSNLTRNKST GLNFNSGSLL KQKGTVANDL SMGKELPSSN FFQSSGSARH PNVSSSRDPV
401: IAGGEPDLSR NQTLDAAGAR SLRKIFNAAQ KTSPVVSSDH KRSSSTRNTN LKNLESAIKG IEGLSFR

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.