CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12421	Soybean	cytosol	35.75	97.6
GSMUA_Achr3P32290_001	Banana	cytosol	29.39	91.16
KRH12426	Soybean	cytosol	46.27	87.92
KRH12422	Soybean	cytosol, nucleus	55.04	87.15
KRH02686	Soybean	nucleus	85.75	86.12
KRH19210	Soybean	nucleus	85.31	85.68
VIT_11s0016g01950.t01	Wine grape	cytosol	82.46	79.32
Solyc03g121820.2.1	Tomato	cytosol, nucleus	78.51	76.17
PGSC0003DMT400006625	Potato	cytosol	78.51	76.01
KRH10045	Soybean	nucleus	78.29	75.8
KRH23272	Soybean	cytosol	78.29	75.64
PGSC0003DMT400012385	Potato	cytosol	75.44	73.66
Solyc06g062790.2.1	Tomato	cytosol, nucleus	75.0	73.23
KRH44105	Soybean	cytosol	76.32	73.11
KRH47076	Soybean	cytosol	58.11	70.29
KRH76321	Soybean	cytosol	57.24	60.42
KRH34398	Soybean	nucleus	59.87	60.4
KRH39332	Soybean	cytosol	56.14	60.09
KRG92405	Soybean	cytosol	59.43	59.43
KRH60238	Soybean	cytosol	55.48	58.84
KRH41527	Soybean	nucleus	55.48	58.84
KRH19588	Soybean	cytosol, nucleus	58.11	58.5
KRG95693	Soybean	cytosol	59.87	58.46
KRH32213	Soybean	cytosol	57.68	58.19
KRH67417	Soybean	nucleus	59.43	57.91
KRH62054	Soybean	cytosol	52.19	55.74
KRH52721	Soybean	cytosol	51.75	55.14
KRH04915	Soybean	cytosol	48.46	52.0
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.75	47.84
KRH52778	Soybean	nucleus	32.02	24.09
KRG93028	Soybean	cytosol	30.7	20.93
KRH62090	Soybean	cytosol	30.92	20.92
KRH46874	Soybean	nucleus	30.48	20.68
KRH01814	Soybean	nucleus	30.48	20.68
KRH36274	Soybean	nucleus	30.48	20.68
KRH62093	Soybean	nucleus	31.58	20.28
KRH44285	Soybean	nucleus	31.36	20.11
KRH47219	Soybean	nucleus	31.58	19.92
KRH06716	Soybean	nucleus	30.92	19.89

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100786777	MapMan:18.4.4.1	EMBL:ACUP02005446	EnsemblPlantsGene:GLYMA_09G065200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	UniProt:I1L1K3
InterPro:IPR000719	EnsemblPlants:KRH37421	ProteinID:KRH37421	ProteinID:KRH37421.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002337B8F	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:6355764..6362318

Molecular Weight (calculated)

51498.2 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.589

Length

456 amino acids

Sequence
(BLAST)

001: MEPRIGNKFR LGRKIGSGSF GEIYLGTNNQ TNEEVAIKLE NVKTKHPQLL YESKLYRVLQ GGTGIPDVRW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFVH SKSFLHRDIK PDNFLMGLRR RANQVYCIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYERISE KKVSTSIEAL CRGYPTEFAS YFHYCRSLRF DDRPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: AAPPARAIGP NVGTSSALPP AVTNADRQTG EEEGRPPGLV SGDSTRRRMT GPIPNSVNIS KQKNPVTTDA ALNKEAMLSR PNVLGQSSGS RRAAVSSSRD
401: AFVGSDLDLR TRTTETNPGT APKTSSVRNA SHVKSYETAV KGIEGLQLEN DEKAHY

Best Arabidopsis Sequence Match ( AT4G26100.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIH TNEELAIKLE NVKTKHPQLL YESKLYRILQ GGTGVPNVKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKSVLMLAD QMINRVEFFH SKSFLHRDLK PDNFLMGLGR RANQVYIIDF GLAKKYRDST THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YILMYFLKGS LPWQGLKAGT KKQKYERISE KKVSTSIEAL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: TAPPSRALNP AVGTSAALPP GISNIDRYTG EEEGRPHMES SRRRVSGALD NSGNISNQPT SSSARDSMIP SSSLFAQSAG SSRRVTAVSG SRDNFPGSEE
401: LLQRSRTGDV SRGVIPRNSP GEAGKSTRRH YESVVKGIDN LQVSDEHHPH

Arabidopsis Description

CKL1CKL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.