CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRG98502
KRG98507
KRH11026
KRH18664
KRH21261
KRH22720
KRH25175
KRH26585
KRH30504
KRH31638
KRH42875
KRH46360
KRH46364
KRH58978
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23340.1	KRH11026	AT1G29240.1	21798944
AT3G23340.1	KRH21261	AT1G29240.1	21798944
AT3G23340.1	KRH42875	AT1G29240.1	21798944
AT3G23340.1	KRH58978	AT1G29240.1	21798944
AT3G23340.1	KRH22720	AT2G27770.1	21798944
AT3G23340.1	KRH25175	AT2G27770.1	21798944
AT3G23340.1	KRH26585	AT2G27770.1	21798944
AT3G23340.1	KRH30504	AT2G27770.1	21798944
AT3G23340.1	KRH11026	AT4G18630.1	21798944
AT3G23340.1	KRH21261	AT4G18630.1	21798944
AT3G23340.1	KRH42875	AT4G18630.1	21798944
AT3G23340.1	KRH58978	AT4G18630.1	21798944
AT4G14340.1	KRG89812	AT2G41090.1	17360592
AT4G14340.1	KRG94975	AT2G41090.1	17360592
AT4G14340.1	KRH18664	AT2G41090.1	17360592
AT4G14340.1	KRG89812	AT2G41100.1	17360592
AT4G14340.1	KRG94975	AT2G41100.1	17360592
AT4G14340.1	KRH18664	AT2G41100.1	17360592
AT4G14340.1	KRH31638	AT4G14640.1	17360592
AT4G14340.1	KRH69070	AT4G14640.1	17360592
AT4G14340.1	KRG98502	AT4G26630.1	25387881
AT4G14340.1	KRG98507	AT4G26630.1	25387881
AT4G14340.1	KRH46360	AT4G26630.1	25387881
AT4G14340.1	KRH46364	AT4G26630.1	25387881
AT4G14340.1	KRG89812	AT5G21274.1	17360592
AT4G14340.1	KRG94975	AT5G21274.1	17360592
AT4G14340.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92405	Soybean	cytosol	98.45	97.59
VIT_05s0049g01240.t01	Wine grape	cytosol	88.94	86.64
Solyc09g090250.2.1	Tomato	nucleus	84.07	81.9
Solyc06g053560.2.1	Tomato	cytosol	78.98	80.77
CDY66573	Canola	cytosol	76.11	79.45
Bra023732.1-P	Field mustard	cytosol	75.89	79.21
CDY18127	Canola	cytosol	75.89	79.21
KRH12421	Soybean	cytosol	29.2	79.04
AT3G23340.1	Thale cress	cytosol	76.11	77.83
KRG95693	Soybean	cytosol	79.2	76.66
KRH67417	Soybean	nucleus	78.98	76.28
CDY12761	Canola	cytosol	75.0	76.01
CDY12062	Canola	cytosol	75.0	75.84
CDX90256	Canola	cytosol	75.66	75.66
Bra010762.1-P	Field mustard	cytosol	75.66	75.66
KRH12426	Soybean	cytosol	40.04	75.42
CDY49413	Canola	cytosol	74.78	74.61
KRH19588	Soybean	cytosol, nucleus	74.78	74.61
AT4G14340.1	Thale cress	cytosol	75.0	74.18
KRH32213	Soybean	cytosol	74.11	74.11
KRH19210	Soybean	nucleus	61.95	61.67
KRH02686	Soybean	nucleus	61.95	61.67
KRH23272	Soybean	cytosol	63.72	61.02
KRH10045	Soybean	nucleus	63.5	60.93
KRH37421	Soybean	nucleus	60.4	59.87
KRH41527	Soybean	nucleus	56.42	59.3
KRH44105	Soybean	cytosol	62.39	59.24
KRH39332	Soybean	cytosol	55.53	58.92
KRH60238	Soybean	cytosol	55.75	58.6
KRH76321	Soybean	cytosol	55.97	58.56
KRH62054	Soybean	cytosol	53.32	56.44
KRH52721	Soybean	cytosol	52.65	55.61
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.19	55.29
KRH47076	Soybean	cytosol	45.8	54.91
KRH04915	Soybean	cytosol	50.22	53.41
KRH12422	Soybean	cytosol, nucleus	29.65	46.53
KRH52778	Soybean	nucleus	34.73	25.91
KRH62090	Soybean	cytosol	34.07	22.85
KRH46874	Soybean	nucleus	33.63	22.62
KRH01814	Soybean	nucleus	33.63	22.62
KRG93028	Soybean	cytosol	33.19	22.42
KRH62093	Soybean	nucleus	34.96	22.25
KRH36274	Soybean	nucleus	32.96	22.17
KRH44285	Soybean	nucleus	34.73	22.08
KRH47219	Soybean	nucleus	34.96	21.85
KRH06716	Soybean	nucleus	32.52	20.73

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100790721	MapMan:18.4.4.1	EMBL:ACUP02006597	EnsemblPlantsGene:GLYMA_10G181700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1LC61	InterPro:IPR000719	EnsemblPlants:KRH34398	ProteinID:KRH34398	ProteinID:KRH34398.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF178	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0001FBD6B3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:41505696..41512460

Molecular Weight (calculated)

51141.1 Da

IEP (calculated)

10.269

GRAVY (calculated)

-0.621

Length

452 amino acids

Sequence
(BLAST)

001: MDHVIGGKFK LGRKIGSGSF GELYLGVNVQ SGEEVAVKLE SVKTKHPQLH YESKLYMLLQ GGTGIPHLKW FGVEGDYNVM VIDLLGPSLE DLFNYCNRKL
101: SLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYIIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLRAGT KKQKYDKISE KKMLTPIEVL CKSYPLEFTS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TMLKYPQIGS
301: SSRARPSGKP VINPGQSGER IERPSGAVEA FARRNGSGLV LHSELSRHKS SDDVPSSKDV QANSERPRSS SRNGSSSKKP VLSSSRPSSS GEPSESRSSR
401: LVLSSGRLST TQRLQPGFES KTSLSRASAT RGGRDDTLRS FELLSLGSGK RK

Best Arabidopsis Sequence Match ( AT3G23340.1 )
(BLAST)

001: MDHVIGGKFK LGRKIGSGSF GELYIGINVQ TGEEVALKLE PVKTKHPQLH YESKVYMLLQ GGTGVPHIKW FGVEGNYNCM AIDLLGPSLE DLFNYCTRSF
101: SLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYIIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGIEQ SRRDDLESLG
201: YVLMYFIRGS LPWQGLKAGT KKQKYEKISE KKMLTPVEVL CKSYPSEFTS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQSGS
301: ISKPRPNPKP ALDPPGPSAE RNEKPIVGQD LRERFSGAVE AFARRNVPSH GIRPKHIFSD DASKEVQVSE KTRNEIATKM AVMSSSQPGS SGELSENRSS
401: KLFSSSAQKI QPVQETKLSA RLGRDDGLRS FDMLTIGSGK RK

Arabidopsis Description

CKL10Casein kinase 1-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.