CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93028	Soybean	cytosol	97.47	97.91
GSMUA_Achr11P...	Banana	cytosol	75.0	84.0
KRH01814	Soybean	nucleus	83.04	83.04
KRH46874	Soybean	nucleus	82.89	82.89
CDY23629	Canola	cytosol	64.58	82.67
CDY55141	Canola	cytosol	75.15	79.91
CDX97505	Canola	mitochondrion	76.93	79.17
CDX75726	Canola	mitochondrion	76.49	78.83
CDX82524	Canola	mitochondrion	76.49	78.59
Solyc12g100310.1.1	Tomato	nucleus	70.09	78.24
TraesCS5B01G000400.2	Wheat	cytosol	69.05	77.72
TraesCS5A01G000600.2	Wheat	cytosol	68.9	77.55
TraesCS5D01G000900.1	Wheat	cytosol	68.9	77.55
KRH52778	Soybean	nucleus	69.35	76.9
Zm00001d041186_P002	Maize	nucleus	68.45	76.79
OQU79738	Sorghum	nucleus	69.79	76.01
HORVU5Hr1G000060.5	Barley	cytosol	66.96	75.63
VIT_06s0004g01090.t01	Wine grape	nucleus	80.06	75.35
Bra027409.1-P	Field mustard	cytosol, plastid	77.23	75.33
CDY51730	Canola	cytosol	76.64	75.29
Bra021498.1-P	Field mustard	cytosol	76.49	75.26
Bra001518.1-P	Field mustard	cytosol	76.34	75.11
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	74.4	74.4
AT3G13670.1	Thale cress	cytosol	77.23	73.83
Solyc01g006120.2.1	Tomato	nucleus	74.7	73.61
GSMUA_Achr6P11480_001	Banana	plastid	76.79	73.5
PGSC0003DMT400081865	Potato	cytosol	64.29	70.36
KRH62090	Soybean	cytosol	70.39	70.18
KRH44285	Soybean	nucleus	70.98	67.09
KRH62093	Soybean	nucleus	70.83	67.04
KRH06716	Soybean	nucleus	69.79	66.15
KRH47219	Soybean	nucleus	71.13	66.11
KRH12421	Soybean	cytosol	10.12	40.72
KRH12426	Soybean	cytosol	14.14	39.58
KRH34398	Soybean	nucleus	22.17	32.96
KRG92405	Soybean	cytosol	22.17	32.68
KRH19210	Soybean	nucleus	21.43	31.72
KRH02686	Soybean	nucleus	21.43	31.72
KRH19588	Soybean	cytosol, nucleus	21.13	31.35
KRH32213	Soybean	cytosol	20.83	30.97
KRG95693	Soybean	cytosol	21.43	30.84
KRH67417	Soybean	nucleus	21.43	30.77
KRH23272	Soybean	cytosol	21.58	30.72
KRH60238	Soybean	cytosol	19.64	30.7
KRH10045	Soybean	nucleus	21.43	30.57
KRH37421	Soybean	nucleus	20.68	30.48
KRH41527	Soybean	nucleus	19.49	30.47
KRH44105	Soybean	cytosol	21.58	30.46
KRH39332	Soybean	cytosol	19.2	30.28
KRH76321	Soybean	cytosol	19.35	30.09
KRH04915	Soybean	cytosol	18.45	29.18
KRH62054	Soybean	cytosol	18.01	28.34
KRH52721	Soybean	cytosol	17.71	27.8
KRH47076	Soybean	cytosol	15.33	27.32
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.52	25.1
KRH12422	Soybean	cytosol, nucleus	9.97	23.26

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100783819	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:ACUP02006723	EnsemblPlantsGene:GLYMA_10G294200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
UniProt:I1LFH1	InterPro:IPR000719	EnsemblPlants:KRH36274	ProteinID:KRH36274	ProteinID:KRH36274.1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF207
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233D7F1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:51149219..51154696

Molecular Weight (calculated)

75516.7 Da

IEP (calculated)

9.703

GRAVY (calculated)

-0.498

Length

672 amino acids

Sequence
(BLAST)

001: MPELRSGVRR GRGRGQKASE PARKEVKARA APRGRPRTRL AAKELELQEP LIPIPPTPIP EPLIPILEPA KEEKKEVGVG VNMGDESGGL SGNKPEEDAT
101: TPPFPDRVQV GGSPMYKVER KLGKGGFGQV FVGRRERATG AGAMEVALKF EHRNSKGCNY GPPYEWQVYN TLGGSYGIPK VHYKGRQGEY YVMVMDILGP
201: SLWDLWNTSS QMMSSEMVSC IAVESLSILE KMHSKGYVHG DVKPENFLLG QPATAQEKKL FLVDLGLATK WRDTSSGQHV DYDQRPDMFR GTVRYASVHA
301: HLGRTASRRD DLESLAYTLV FLHKGRLPWQ GYQGDSKSFL VCKKKMGTSP ETLCCLCPPP FRHFLEIVVN MKFDEEPNYS KLISLFDGTI GPNPALRPIN
401: TEGAQKVGQK RGRLNVEDDE SQPRKKVRLG VPATQWISIY NARLPMKQRY HYNVSDARLE QHVERGVADG LLISCVSSCC NLWALIMDAG TGFTAQVYKL
501: STFFLHKEWI MEQWDKNFYI TSIAGSNNGS SLVVMSKGTQ YTQQSYKVSE SFPFKWINKK WREGFHVTSM ATAGSRWGVV MSRNAGFSKQ VVELDFLYPS
601: EGIHKRWDKG YRITATAATL DQSALILSIP RRKLSDETQE TLRTSQFPST HVKDKWSKNL YLACLCYGRT VC

Best Arabidopsis Sequence Match ( AT3G13670.1 )
(BLAST)

001: MPELRRGVRR GRVTDAVAPN QLPQTPTEKK PKKSTVKAPK PVAGGVTGVA ERPRTRLAAR KLKEEDKEIP QEIPVVVPSK DSDIDKNKGK EVVVEEEKKD
101: MAIGNDSGGS NKAAAQEEEG NTAPFPERVQ VGGSPLYKVE RKLGKGGFGQ VFVGRRISGG NDRSAGASIL EVALKFEHRS SKGCNYGPPH EWQVYNTLGG
201: SHGVPRVHFK GRQGDYYVMV MDMLGPSLWD LWNTSGQAMS SEMVACIAVE SLSILEKMHA KGYVHGDVKP ENFLLGQPST SQEKKLFLVD LGLATKWREG
301: GSGQHVEYDQ RPDMFRGTVR YASAHAHLGR TASRRDDLES LAYTLIFLHR GRLPWQGYQG DNKSFLVCKK KMATSPDMLC CFCPPPFKQF LEIVVNMKFD
401: EEPNYGKLVS LFQDLLGENP AIRPINTEGA QKIIFQVGQK RGRLSIGEEE EDAPRKKVRL GVPATQWISI YNARQPMKQR YHYNVADIRL AQHIERGIAD
501: GLLISCVSSC SNLWALIMDA GTGFTHQVYE LSPVFLHKEW IMEQWEKNYY ISSIAGASNG SSLVVMSKGT QYTQQSYKVS DSFPFKWINK KWREGFHVTS
601: MATAGNRWGV VMSRNSGYSE QVVELDFLYP SEGIHRRWDG GFRITSTAAT TDQAALILSI PRRRLVDETQ ETLRTSQFPS THVKEKWGKN LYLASLSYGR
701: TVS

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LID3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.