CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01814	Soybean	nucleus	98.51	98.51
GSMUA_Achr11P...	Banana	cytosol	77.23	86.5
CDY23629	Canola	cytosol	66.96	85.71
KRG93028	Soybean	cytosol	82.74	83.11
KRH36274	Soybean	nucleus	82.89	82.89
CDY55141	Canola	cytosol	77.68	82.59
CDX97505	Canola	mitochondrion	79.76	82.08
Solyc12g100310.1.1	Tomato	nucleus	73.36	81.89
CDX75726	Canola	mitochondrion	78.42	80.83
CDX82524	Canola	mitochondrion	78.27	80.43
VIT_06s0004g01090.t01	Wine grape	nucleus	84.52	79.55
TraesCS5D01G000900.1	Wheat	cytosol	70.54	79.4
TraesCS5B01G000400.2	Wheat	cytosol	70.54	79.4
KRH52778	Soybean	nucleus	71.58	79.37
TraesCS5A01G000600.2	Wheat	cytosol	70.39	79.23
Bra027409.1-P	Field mustard	cytosol, plastid	80.65	78.66
CDY51730	Canola	cytosol	79.91	78.51
Bra021498.1-P	Field mustard	cytosol	79.61	78.33
Zm00001d041186_P002	Maize	nucleus	69.79	78.3
OQU79738	Sorghum	nucleus	71.13	77.47
Solyc01g006120.2.1	Tomato	nucleus	78.57	77.42
Bra001518.1-P	Field mustard	cytosol	78.42	77.16
HORVU5Hr1G000060.5	Barley	cytosol	68.3	77.14
AT3G13670.1	Thale cress	cytosol	80.65	77.1
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	76.19	76.19
GSMUA_Achr6P11480_001	Banana	plastid	78.27	74.93
PGSC0003DMT400081865	Potato	cytosol	67.41	73.78
KRH62090	Soybean	cytosol	72.47	72.26
KRH44285	Soybean	nucleus	73.81	69.76
KRH47219	Soybean	nucleus	74.4	69.16
KRH62093	Soybean	nucleus	72.32	68.45
KRH06716	Soybean	nucleus	71.43	67.7
KRH12426	Soybean	cytosol	13.69	38.33
KRH12421	Soybean	cytosol	9.52	38.32
KRH34398	Soybean	nucleus	22.62	33.63
KRG92405	Soybean	cytosol	22.62	33.33
KRH19588	Soybean	cytosol, nucleus	21.43	31.79
KRH19210	Soybean	nucleus	21.28	31.5
KRH02686	Soybean	nucleus	21.28	31.5
KRH32213	Soybean	cytosol	21.13	31.42
KRG95693	Soybean	cytosol	21.73	31.26
KRH67417	Soybean	nucleus	21.73	31.2
KRH23272	Soybean	cytosol	21.73	30.93
KRH10045	Soybean	nucleus	21.58	30.79
KRH37421	Soybean	nucleus	20.68	30.48
KRH44105	Soybean	cytosol	21.58	30.46
KRH60238	Soybean	cytosol	19.05	29.77
KRH39332	Soybean	cytosol	18.75	29.58
KRH41527	Soybean	nucleus	18.9	29.53
KRH76321	Soybean	cytosol	18.9	29.4
KRH62054	Soybean	cytosol	18.01	28.34
KRH04915	Soybean	cytosol	17.86	28.24
KRH47076	Soybean	cytosol	15.62	27.85
KRH52721	Soybean	cytosol	17.71	27.8
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.82	25.88
KRH12422	Soybean	cytosol, nucleus	10.71	25.0

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100803733	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:ACUP02005362	EnsemblPlantsGene:GLYMA_08G361700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
UniProt:I1KZH6	InterPro:IPR000719	EnsemblPlants:KRH46874	ProteinID:KRH46874	ProteinID:KRH46874.1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF207
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002337E1A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:47331139..47339016

Molecular Weight (calculated)

75372.9 Da

IEP (calculated)

9.792

GRAVY (calculated)

-0.527

Length

672 amino acids

Sequence
(BLAST)

001: MSELRSGPRR RRAPIARKSS EPPSPAGRYV KTRAAVAREA AAAAERPRTR LAAKKEEKPL KVISDHTKKD DAAMADESGG LSANKGVAQE DDTNAAPFPE
101: RVQVGGSPVY KVERKLGKGG FGQVFVGRRV TGGNDRSTGA GATEVALKFE HRNSKGCNYG PPYEWQVYNT LGGSHGIPKV HYKGRQGEYY VMVMDMLGPS
201: LWDVWNSSSQ TMTAEMVACI AVESLSILEK MHARGYVHGD VKPENFLLGQ PSTPQEKKLF LVDLGLATKW RDTSSGQHVE YDQRPDMFRG TVRYASVHAH
301: LGRTASRRDD LESLAYTLIF LHKGRLPWQG YQGDHKSFLV CKKKMGTSPE MLCCFCPAPF RQFLEIVVNM KFDEEPNYSR LISLFDGMLG PNPALRPINT
401: EGAQKVGQKR GRLNIEEEDD SQPKKKVRLG VPATQWISVY NARLPMKQRY HYNVADARLA QHVERGIADG LLISCVASCS NLWALIMDAG TGFSSQVYKL
501: SPFFLHKEWI MEQWEKNYYI TSIAGANNGS SLVVMSKGTQ YTQQSYKVSD SFPFKWINKK WREGFHVTSM ATAGSRWGVV MSRNAGFSDQ VVELDFLYPS
601: EGIHRRWDNG YRITATAATW DQSALILSIP RRRPGDETQE TLRTSQFPST HVKEKWSKNL YLACLCYGRT VC

Best Arabidopsis Sequence Match ( AT3G13670.1 )
(BLAST)

001: MPELRRGVRR GRVTDAVAPN QLPQTPTEKK PKKSTVKAPK PVAGGVTGVA ERPRTRLAAR KLKEEDKEIP QEIPVVVPSK DSDIDKNKGK EVVVEEEKKD
101: MAIGNDSGGS NKAAAQEEEG NTAPFPERVQ VGGSPLYKVE RKLGKGGFGQ VFVGRRISGG NDRSAGASIL EVALKFEHRS SKGCNYGPPH EWQVYNTLGG
201: SHGVPRVHFK GRQGDYYVMV MDMLGPSLWD LWNTSGQAMS SEMVACIAVE SLSILEKMHA KGYVHGDVKP ENFLLGQPST SQEKKLFLVD LGLATKWREG
301: GSGQHVEYDQ RPDMFRGTVR YASAHAHLGR TASRRDDLES LAYTLIFLHR GRLPWQGYQG DNKSFLVCKK KMATSPDMLC CFCPPPFKQF LEIVVNMKFD
401: EEPNYGKLVS LFQDLLGENP AIRPINTEGA QKIIFQVGQK RGRLSIGEEE EDAPRKKVRL GVPATQWISI YNARQPMKQR YHYNVADIRL AQHIERGIAD
501: GLLISCVSSC SNLWALIMDA GTGFTHQVYE LSPVFLHKEW IMEQWEKNYY ISSIAGASNG SSLVVMSKGT QYTQQSYKVS DSFPFKWINK KWREGFHVTS
601: MATAGNRWGV VMSRNSGYSE QVVELDFLYP SEGIHRRWDG GFRITSTAAT TDQAALILSI PRRRLVDETQ ETLRTSQFPS THVKEKWGKN LYLASLSYGR
701: TVS

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LID3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.