CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52778	Soybean	nucleus	82.68	96.86
KRH62090	Soybean	cytosol	88.87	93.62
GSMUA_Achr6P26340_001	Banana	cytosol	74.08	86.8
GSMUA_Achr9P06110_001	Banana	cytosol	72.96	85.34
Os01t0744300-01	Rice	cytosol, nucleus, plastid	71.69	85.26
EES19200	Sorghum	cytosol	72.39	84.68
Zm00001d037744_P001	Maize	cytosol	72.25	84.51
GSMUA_Achr2P15650_001	Banana	cytosol	71.55	83.97
TraesCS1B01G143100.4	Wheat	cytosol	71.69	83.86
Os05t0200500-02	Rice	cytosol	71.69	83.86
TraesCS1D01G130400.2	Wheat	cytosol	70.99	83.03
TraesCS1A01G123900.2	Wheat	cytosol	71.27	82.95
EES00121	Sorghum	cytosol	70.42	82.1
Zm00001d039409_P004	Maize	cytosol	70.28	81.67
GSMUA_AchrUn_...	Banana	cytosol	42.39	80.48
VIT_09s0002g03680.t01	Wine grape	cytosol	79.72	80.4
Zm00001d008863_P004	Maize	cytosol	57.04	80.36
TraesCS3A01G311600.3	Wheat	cytosol	68.03	79.57
HORVU3Hr1G027270.1	Barley	cytosol	67.89	79.41
Solyc12g095830.1.1	Tomato	nucleus	78.17	78.72
TraesCS3B01G160600.1	Wheat	cytosol	67.89	78.63
TraesCS3D01G142700.1	Wheat	cytosol	67.89	78.63
PGSC0003DMT400047803	Potato	cytosol, mitochondrion, nucleus, plastid	76.06	78.37
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	76.2	78.18
GSMUA_Achr4P01010_001	Banana	plastid	74.79	77.63
PGSC0003DMT400075580	Potato	cytosol	76.34	76.77
TraesCS3D01G275000.1	Wheat	cytosol	71.55	76.39
TraesCS3B01G308800.1	Wheat	cytosol	71.41	76.36
Os01t0198200-01	Rice	cytosol, mitochondrion, nucleus, vacuole	68.17	76.1
KRH44285	Soybean	nucleus	75.92	75.81
OQU79450	Sorghum	nucleus	63.8	75.75
TraesCS3A01G275100.1	Wheat	cytosol	70.99	75.45
HORVU3Hr1G070920.2	Barley	mitochondrion	70.14	74.44
KRH47219	Soybean	nucleus	75.63	74.27
KRH01814	Soybean	nucleus	68.73	72.62
KRH46874	Soybean	nucleus	68.45	72.32
KRG93028	Soybean	cytosol	67.32	71.45
GSMUA_Achr9P00060_001	Banana	cytosol	22.68	70.93
KRH36274	Soybean	nucleus	67.04	70.83
Zm00001d012761_P002	Maize	cytosol, mitochondrion, nucleus, plastid	67.04	70.31
GSMUA_AchrUn_...	Banana	cytosol	17.32	66.85
KRH06716	Soybean	nucleus	66.2	66.29
HORVU1Hr1G028450.16	Barley	cytosol	63.24	62.89
GSMUA_Achr9P00070_001	Banana	extracellular	16.48	52.94
KRH12421	Soybean	cytosol	9.44	40.12
KRH12426	Soybean	cytosol	13.52	40.0
KRH34398	Soybean	nucleus	22.25	34.96
KRG92405	Soybean	cytosol	22.39	34.87
KRG95693	Soybean	cytosol	21.83	33.19
KRH67417	Soybean	nucleus	21.83	33.12
KRH02686	Soybean	nucleus	21.13	33.04
KRH19210	Soybean	nucleus	21.13	33.04
KRH19588	Soybean	cytosol, nucleus	20.85	32.67
KRH32213	Soybean	cytosol	20.7	32.52
KRH10045	Soybean	nucleus	21.27	32.06
KRH23272	Soybean	cytosol	21.13	31.78
KRH37421	Soybean	nucleus	20.28	31.58
KRH60238	Soybean	cytosol	19.01	31.4
KRH41527	Soybean	nucleus	18.87	31.16
KRH39332	Soybean	cytosol	18.45	30.75
KRH44105	Soybean	cytosol	20.56	30.67
KRH76321	Soybean	cytosol	18.59	30.56
KRH62054	Soybean	cytosol	17.89	29.74
KRH52721	Soybean	cytosol	17.89	29.67
KRH04915	Soybean	cytosol	17.46	29.18
KRH47076	Soybean	cytosol	15.35	28.91
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.72	27.06
KRH12422	Soybean	cytosol, nucleus	10.28	25.35

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100779382	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:ACUP02002219	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G086000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1JUX3	InterPro:IPR000719	EnsemblPlants:KRH62093	ProteinID:KRH62093	ProteinID:KRH62093.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51257
PANTHER:PTHR11909	PANTHER:PTHR11909:SF73	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002339DCE	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7323392..7328530

Molecular Weight (calculated)

79184.0 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.470

Length

710 amino acids

Sequence
(BLAST)

001: MPELRSRPHI SRLVDSANAN PTTQPASPPA AGACRRKPAV AAAPTGRNRR LNNAIAVAAD QILNAEDEGG AVRGTRARKL KQDQGVKENI KNKNVSVRVL
101: EVEGMDEYDS GSRSADKAPG AEDEGTTPPI PEKVQVGGSP LYRVERKLGK GGFGQVYVGR LLGAANSSER TGAGAVEVAL KFEHRSSKGC NYGPPYEWQV
201: YNALGGSHGV PQAHYKGQQG DYYIMVMDIL GPSLWDVWNN NNPHMMSTEM VACIAIEAIS ILEKMHSRGY VHGDVKPENF LLGLPGTLDE KKLFLVDLGL
301: ATRWRDSSTG LHVDYDQRPD VFRGTVRYAS VHAHLGRTGS RRDDLESLAY TLVFLLRGRL PWQGYQGENK GFLVCKKKMA TSPETLCCFC PQPFRQFVEY
401: VVNLKFDEEP NYAKYISLFD GIVGPNPDIR PINTEGAQKL ICQVGHKRGR LTIEEDDDEQ PNKKVRMGMP ATQWISVYNA RRPMKQRYHY NVADVRLAQH
501: IDKGNEDGLF ISSVASCSNL WALIMDAGTG FTAQVYELSP HFLHKEWIME QWEKNYYISA IAGVNNGSSL VVMSKGTQYL QQSYKVSDSF PFKWINKKWR
601: EGFYVTAMAT AGSRWAIVMS RGAGFSDQVV ELDFLYPSEG IHRRWDSGYR ITSTAATWDQ AAFVLSVPRR KPADETQETL RTSAFPGTHV KEKWAKNLYI
701: ASICYGRTVS

Best Arabidopsis Sequence Match ( AT2G25760.1 )
(BLAST)

001: MPELRSNARR DRDKKNPKQN PIALKQSPVR RNPRRQLKKK VVVKEAIVAA EKTTPLVKEE EEQIRVSSED KKMDENDSGG QAAPVPDDEG NAPPLPEKVQ
101: VGNSPMYKLD RKLGKGGFGQ VYVGRKMGTS TSNARFGPGA LEVALKFEHR TSKGCNYGPP YEWQVYNALG GSHGVPRVHF KGRQGDFYVM VMDILGPSLW
201: DVWNSTTQAM STEMVACIAI EAISILEKMH SRGYVHGDVK PENFLLGPPG TPEEKKLFLV DLGLASKWRD TATGLHVEYD QRPDVFRGTV RYASVHAHLG
301: RTCSRRDDLE SLAYTLVFLL RGRLPWQGYQ GENKGFLVCK KKMATSPETL CCFCPQPFRQ FVEYVVNLKF DEEPDYAKYV SLFDGIVGPN PDIRPINTEG
401: AQKLIHQVGQ KRGRLTMDEE DEQPTKKIRL GMPATQWISI YSAHRPMKQR YHYNVTDTRL AQHIEKGNED GLFISSVASC TDLWALIMDA GSGFTDQVYQ
501: LSPSFLHKEW IMEQWEKNYY ITAVAGANSG NSFVVMSKGT QYLQQSYKVS DSFPFKWINK KWREGFYVTS MATAGSKWGI VMSRGASFSD QVIELDFLYP
601: SEGIHRRWEN GYRITSVAAT WDQAAFVLSV PRRKLTDETQ ETLRTSAFPS NHVKEKWGKN LYIASICYGR TVS

Arabidopsis Description

Protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4ISN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.