CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60238	Soybean	cytosol	97.21	97.21
KRH76321	Soybean	cytosol	87.21	86.81
KRH39332	Soybean	cytosol	85.35	86.15
VIT_11s0016g03460.t01	Wine grape	cytosol	83.02	82.45
Solyc12g007280.1.1	Tomato	cytosol	70.47	80.8
PGSC0003DMT400001003	Potato	cytosol	74.88	76.12
AT4G28860.1	Thale cress	cytosol	72.79	75.6
GSMUA_Achr7P14470_001	Banana	cytosol	76.05	75.52
CDY50929	Canola	cytosol	73.72	75.3
AT4G28880.1	Thale cress	cytosol	72.56	75.18
KRH12421	Soybean	cytosol	29.07	74.85
CDX92899	Canola	cytosol	73.26	74.82
GSMUA_Achr2P19240_001	Banana	cytosol	74.65	73.96
CDY06860	Canola	cytosol	70.7	72.9
Bra011067.1-P	Field mustard	cytosol	70.23	72.42
CDY35229	Canola	cytosol	69.77	71.94
GSMUA_Achr8P19730_001	Banana	cytosol	49.77	71.81
TraesCS6B01G218400.1	Wheat	cytosol	67.21	71.53
KRH12426	Soybean	cytosol	39.53	70.83
Os02t0280400-02	Rice	cytosol	68.37	70.67
TraesCS6D01G174800.2	Wheat	cytosol	67.21	70.49
TraesCS6A01G196400.2	Wheat	cytosol	67.21	70.49
Bra024179.1-P	Field mustard	cytosol, plastid	70.0	70.33
TraesCS3B01G181900.3	Wheat	cytosol	65.81	70.05
TraesCS3D01G162900.1	Wheat	cytosol	65.81	70.05
TraesCS3A01G155400.4	Wheat	cytosol	65.58	69.8
KRH62054	Soybean	cytosol	67.91	68.38
KXG30048	Sorghum	cytosol	66.51	68.26
Os01t0231500-01	Rice	cytosol	67.44	67.44
KRH52721	Soybean	cytosol	66.98	67.29
Zm00001d053316_P013	Maize	cytosol	65.81	66.43
HORVU0Hr1G016190.11	Barley	cytosol	60.47	66.33
Zm00001d039296_P005	Maize	cytosol	63.26	66.18
KXG31490	Sorghum	cytosol	64.65	64.5
KRH04915	Soybean	cytosol	63.72	64.47
HORVU3Hr1G031560.1	Barley	cytosol, plastid	65.58	59.24
KRH02686	Soybean	nucleus	60.0	56.83
KRH19210	Soybean	nucleus	60.0	56.83
KRH34398	Soybean	nucleus	59.3	56.42
KRH10045	Soybean	nucleus	61.16	55.84
KRH37421	Soybean	nucleus	58.84	55.48
KRG92405	Soybean	cytosol	58.6	55.26
KRH23272	Soybean	cytosol	60.47	55.08
KRH44105	Soybean	cytosol	60.93	55.04
KRH32213	Soybean	cytosol	57.44	54.65
KRH19588	Soybean	cytosol, nucleus	56.98	54.08
KRG95693	Soybean	cytosol	58.6	53.96
KRH67417	Soybean	nucleus	57.91	53.21
KRH47076	Soybean	cytosol	43.49	49.6
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.67	46.67
KRH12422	Soybean	cytosol, nucleus	29.77	44.44
KRH52778	Soybean	nucleus	30.7	21.78
KRG93028	Soybean	cytosol	30.47	19.58
KRH36274	Soybean	nucleus	30.47	19.49
KRH62090	Soybean	cytosol	30.47	19.44
KRH01814	Soybean	nucleus	29.53	18.9
KRH46874	Soybean	nucleus	29.53	18.9
KRH62093	Soybean	nucleus	31.16	18.87
KRH06716	Soybean	nucleus	30.23	18.34
KRH44285	Soybean	nucleus	30.0	18.14
KRH47219	Soybean	nucleus	30.47	18.12

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100800342	MapMan:18.4.4.1	EMBL:ACUP02004770	EnsemblPlantsGene:GLYMA_08G035700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1KPY8	InterPro:IPR000719	EnsemblPlants:KRH41527	ProteinID:KRH41527	ProteinID:KRH41527.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF97	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002337C5C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:2828149..2832249

Molecular Weight (calculated)

48293.8 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.445

Length

430 amino acids

Sequence
(BLAST)

001: MERIVGGKYK LGRKIGSGSF GEIYLATHID TFEIVAVKIE NSKTKHPQLL YEAKLYNILQ GGSGIPNIKW SGIDGEDNVL VIDLLGPSLE DLFVYCGRKF
101: SLKTVLLLAD QMITRIEYVH SKGFLHRDIK PDNFLMGLGR KANQVYIIDF GLAKRYRDST TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAAT KKQKYDKICQ KKLSTPIEVL CKSHPVEFAS YFHYCHSLTF DQRPDYGFLK RLFRDLFARE GYDFDYVFDW TILKYQQSQK
301: NVMLPPLSPV PGASNSRATP IDVDSHQGLN AYSGHVKERI RAGDATGSGV KIQFKSPVGK NLSYENPLDK NIFGEANIPS TSFSPASTSK RNSLKQSLSA
401: EASNPGHAQG SKMGPSSSWM SSLQRMSSAK

Best Arabidopsis Sequence Match ( AT4G28880.3 )
(BLAST)

001: MERIIGGKYK LGRKIGGGSF GEIFLATHVD TFEIVAVKIE NSKTKHPQLL YEAKLYRILE GGSGIPRIKW FGVDGTENAL VMDLLGPSLE DLFVYCGRKF
101: SPKTVLMLAD QMLTRIEFVH SKGYLHRDIK PDNFLMGLGR KANQVYLIDF GLAKRYRDAN TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAVD KKQKYDKICE KKISTPIEVL CKNHPVEFAS YFHYCHTLTF DQRPDYGFLK RLFRDLFSRE GYEFDYIFDW TIIKYQQAQK
301: SRNQSQAVPG SSNPRAMPVD TSNHRGGPNI SYEAEASERV RSANAIGPSP QINNNTAAGR TPGFDHPVHK NMNMPSTSLS PAGTSKRNVG PETSNSGYGS
401: GNRTGWTSSF MSPEK

Arabidopsis Description

CKL3Ckl3 [Source:UniProtKB/TrEMBL;Acc:A0A178UXY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.