CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23272	Soybean	cytosol	95.54	95.34
KRH12421	Soybean	cytosol	33.12	93.41
GSMUA_Achr3P32290_001	Banana	cytosol	28.45	91.16
KRH12426	Soybean	cytosol	43.1	84.58
KRH44105	Soybean	cytosol	84.93	84.03
KRH47076	Soybean	cytosol	66.24	82.76
KRH02686	Soybean	nucleus	79.41	82.38
KRH19210	Soybean	nucleus	79.41	82.38
Solyc03g121820.2.1	Tomato	cytosol, nucleus	78.34	78.51
KRH37421	Soybean	nucleus	75.8	78.29
PGSC0003DMT400006625	Potato	cytosol	78.13	78.13
Solyc06g062790.2.1	Tomato	cytosol, nucleus	76.86	77.52
PGSC0003DMT400012385	Potato	cytosol	75.8	76.45
KRH12422	Soybean	cytosol, nucleus	40.98	67.01
KRH34398	Soybean	nucleus	60.93	63.5
KRG92405	Soybean	cytosol	60.3	62.28
KRH41527	Soybean	nucleus	55.84	61.16
KRH76321	Soybean	cytosol	56.05	61.11
KRH60238	Soybean	cytosol	55.63	60.93
KRH39332	Soybean	cytosol	54.56	60.33
KRH19588	Soybean	cytosol, nucleus	57.75	60.04
KRG95693	Soybean	cytosol	59.24	59.74
KRH32213	Soybean	cytosol	57.32	59.73
KRH67417	Soybean	nucleus	58.81	59.19
KRH62054	Soybean	cytosol	51.59	56.91
KRH52721	Soybean	cytosol	51.17	56.31
KRH04915	Soybean	cytosol	48.62	53.88
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.18	50.2
KRH52778	Soybean	nucleus	32.06	24.92
KRH62090	Soybean	cytosol	31.21	21.81
KRG93028	Soybean	cytosol	30.79	21.67
KRH46874	Soybean	nucleus	30.79	21.58
KRH01814	Soybean	nucleus	30.79	21.58
KRH36274	Soybean	nucleus	30.57	21.43
KRH62093	Soybean	nucleus	32.06	21.27
KRH06716	Soybean	nucleus	31.63	21.02
KRH44285	Soybean	nucleus	31.21	20.68
KRH47219	Soybean	nucleus	31.42	20.47

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100795570	MapMan:18.4.4.1	EMBL:ACUP02009117	EnsemblPlantsGene:GLYMA_15G025900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719
UniProt:K7M967	ProteinID:KRH10044.1	EnsemblPlants:KRH10045	ProteinID:KRH10045	ProteinID:KRH10045.1	ProteinID:KRH10046.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000233BA1C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:2098328..2103957

Molecular Weight (calculated)

53138.0 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.599

Length

471 amino acids

Sequence
(BLAST)

001: MEPRVANKFR LGRKIGSGSF GEIYLGTNTQ TNEEVAIKLE NVKTKHPQLL YESKLYKILQ GGTGIPNVRW FGIEGDYNVL VMDLLGPSLE DLFNFCTRKL
101: SLKTVLMLAD QMINRVEFIH SKSFLHRDIK PDNFLMGLGR RANQVYAIDF GLAKKYRDTS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: FVLMYFLRGS LPWQGLKAGT KKQKYEKISE KKVSTSIESL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RLFRDLFIRE GFQFDYVFDW TILKYQQSQI
301: ATPVRVIVPA AGQSSGLPPA VVNADRQTGG VNSRHTGWSS SDPARRRNSG PIANDGMSSR QKAPVPSDST GSKDVMLSSS NFRSSGSTRR GAVSSSRDAA
401: VGNETEPSHP LTMDASPGAL RKISNAQRSS PIMSFEHNRT SSGRNTSNMK NYESTLRGIE TLNFNDERLQ Y

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.