CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26340_001	Banana	cytosol	87.95	87.95
KRH62090	Soybean	cytosol	96.2	86.5
Os01t0744300-01	Rice	cytosol, nucleus, plastid	84.98	86.26
GSMUA_Achr9P06110_001	Banana	cytosol	86.14	86.0
EES19200	Sorghum	cytosol	85.64	85.5
Zm00001d037744_P001	Maize	cytosol	85.64	85.5
GSMUA_Achr2P15650_001	Banana	cytosol	85.31	85.45
Os05t0200500-02	Rice	cytosol	84.82	84.68
TraesCS1B01G143100.4	Wheat	cytosol	84.65	84.51
EES00121	Sorghum	cytosol	84.49	84.07
TraesCS1D01G130400.2	Wheat	cytosol	83.99	83.86
TraesCS1A01G123900.2	Wheat	cytosol	84.16	83.61
Zm00001d039409_P004	Maize	cytosol	83.99	83.31
KRH62093	Soybean	nucleus	96.86	82.68
GSMUA_AchrUn_...	Banana	cytosol	50.49	81.82
Zm00001d008863_P004	Maize	cytosol	67.66	81.35
TraesCS3A01G311600.3	Wheat	cytosol	80.53	80.4
HORVU3Hr1G027270.1	Barley	cytosol	80.36	80.23
TraesCS3D01G142700.1	Wheat	cytosol	80.36	79.45
TraesCS3B01G160600.1	Wheat	cytosol	80.36	79.45
VIT_09s0002g03680.t01	Wine grape	cytosol	91.58	78.84
PGSC0003DMT400047803	Potato	cytosol, mitochondrion, nucleus, plastid	88.78	78.08
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	88.78	77.75
Solyc12g095830.1.1	Tomato	nucleus	90.26	77.59
OQU79450	Sorghum	nucleus	75.58	76.59
Os01t0198200-01	Rice	cytosol, mitochondrion, nucleus, vacuole	79.54	75.79
GSMUA_Achr4P01010_001	Banana	plastid	85.48	75.73
PGSC0003DMT400075580	Potato	cytosol	88.12	75.64
TraesCS3D01G275000.1	Wheat	cytosol	81.35	74.14
KRH44285	Soybean	nucleus	86.96	74.12
TraesCS3B01G308800.1	Wheat	cytosol	81.19	74.1
TraesCS3A01G275100.1	Wheat	cytosol	81.19	73.65
KRH47219	Soybean	nucleus	87.13	73.03
HORVU3Hr1G070920.2	Barley	mitochondrion	80.03	72.5
KRH01814	Soybean	nucleus	79.54	71.73
KRH46874	Soybean	nucleus	79.37	71.58
GSMUA_Achr9P00060_001	Banana	cytosol	26.73	71.37
KRG93028	Soybean	cytosol	77.23	69.96
KRH36274	Soybean	nucleus	76.9	69.35
Zm00001d012761_P002	Maize	cytosol, mitochondrion, nucleus, plastid	77.39	69.28
GSMUA_AchrUn_...	Banana	cytosol	20.63	67.93
KRH06716	Soybean	nucleus	76.73	65.59
HORVU1Hr1G028450.16	Barley	cytosol	74.59	63.31
GSMUA_Achr9P00070_001	Banana	extracellular	19.31	52.94
KRH12421	Soybean	cytosol	11.22	40.72
KRH12426	Soybean	cytosol	16.01	40.42
KRH34398	Soybean	nucleus	25.91	34.73
KRG92405	Soybean	cytosol	26.07	34.65
KRH02686	Soybean	nucleus	25.08	33.48
KRH19210	Soybean	nucleus	25.08	33.48
KRG95693	Soybean	cytosol	25.25	32.76
KRH67417	Soybean	nucleus	25.25	32.69
KRH19588	Soybean	cytosol, nucleus	24.26	32.45
KRH32213	Soybean	cytosol	24.09	32.3
KRH10045	Soybean	nucleus	24.92	32.06
KRH37421	Soybean	nucleus	24.09	32.02
KRH23272	Soybean	cytosol	24.92	31.99
KRH44105	Soybean	cytosol	24.42	31.09
KRH60238	Soybean	cytosol	21.95	30.93
KRH41527	Soybean	nucleus	21.78	30.7
KRH39332	Soybean	cytosol	21.29	30.28
KRH76321	Soybean	cytosol	21.45	30.09
KRH04915	Soybean	cytosol	20.63	29.41
KRH62054	Soybean	cytosol	20.63	29.27
KRH52721	Soybean	cytosol	20.63	29.21
KRH47076	Soybean	cytosol	17.99	28.91
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.39	27.06
KRH12422	Soybean	cytosol, nucleus	12.21	25.69

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100800125	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:ACUP02003436	EnsemblPlantsGene:GLYMA_06G087500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
UniProt:I1K9F9	InterPro:IPR000719	EnsemblPlants:KRH52778	ProteinID:KRH52778	ProteinID:KRH52778.1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF73
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233A8B1

Description

hypothetical protein

Coordinates

chr6:+:6768562..6774302

Molecular Weight (calculated)

68293.1 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.470

Length

606 amino acids

Sequence
(BLAST)

001: MDEFDSGGRS GDKAPGAEDE GTTPPIPEKV QVGGSPLYRV ERKLGKGGFG QVYVGRRLGA VNSSERTGSG AVEVALKFEH RSSKGCNYGP PYEWQVYNAL
101: GGSHGVPRVH YKGRHGDYYI MVMDMLGPSL WDVWNNNNPH MMSTEMVACI AIEAISILEK MHSRGYVHGD VKPENFLLGP PGTPDEKKLF LVDLGLATRW
201: RDSSTGLHVD YDQRPDVFRG TVRYASVHAH LGRTGSRRDD LESLAYTLVF LLRGRLPWQG YQGENKGFLV CKKKMATSPE TLCCFCPQPF RQFVEYVVNL
301: KFDEEPNYAK YISLFDGIVG PNPDIRPINT DGAQKLICQV GHKRGRLTIE EDDDEQPNKK VRMGMPATQW ISVYNARRPM KQRYHYNVAD VRLAQHIDKG
401: NEDGLFISSV ASCSNLWALI MDAGTGFTAQ VYELSPFFLH KEWIMEQWEK NYYISAIAGA NNGSSLVVMS KGTQYLQQSY KVSDSFPFKW INKKWREGFY
501: VTAMATSGSR WAIVMSRGAG FSDQVVELDF LYPSEGIHRR WDNGYRITST AATWDQAAFV LSVPRRKPAD ETQETLRTSA FPSTHVKEKW AKNLYIASIC
601: YGRTVS

Best Arabidopsis Sequence Match ( AT2G25760.1 )
(BLAST)

001: MPELRSNARR DRDKKNPKQN PIALKQSPVR RNPRRQLKKK VVVKEAIVAA EKTTPLVKEE EEQIRVSSED KKMDENDSGG QAAPVPDDEG NAPPLPEKVQ
101: VGNSPMYKLD RKLGKGGFGQ VYVGRKMGTS TSNARFGPGA LEVALKFEHR TSKGCNYGPP YEWQVYNALG GSHGVPRVHF KGRQGDFYVM VMDILGPSLW
201: DVWNSTTQAM STEMVACIAI EAISILEKMH SRGYVHGDVK PENFLLGPPG TPEEKKLFLV DLGLASKWRD TATGLHVEYD QRPDVFRGTV RYASVHAHLG
301: RTCSRRDDLE SLAYTLVFLL RGRLPWQGYQ GENKGFLVCK KKMATSPETL CCFCPQPFRQ FVEYVVNLKF DEEPDYAKYV SLFDGIVGPN PDIRPINTEG
401: AQKLIHQVGQ KRGRLTMDEE DEQPTKKIRL GMPATQWISI YSAHRPMKQR YHYNVTDTRL AQHIEKGNED GLFISSVASC TDLWALIMDA GSGFTDQVYQ
501: LSPSFLHKEW IMEQWEKNYY ITAVAGANSG NSFVVMSKGT QYLQQSYKVS DSFPFKWINK KWREGFYVTS MATAGSKWGI VMSRGASFSD QVIELDFLYP
601: SEGIHRRWEN GYRITSVAAT WDQAAFVLSV PRRKLTDETQ ETLRTSAFPS NHVKEKWGKN LYIASICYGR TVS

Arabidopsis Description

Protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4ISN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.