CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32213	Soybean	cytosol	96.91	97.12
KRG95693	Soybean	cytosol	86.53	83.94
KRH67417	Soybean	nucleus	86.53	83.76
KRH12421	Soybean	cytosol	28.92	78.44
KRG92405	Soybean	cytosol	75.28	74.78
KRH34398	Soybean	nucleus	74.61	74.78
KRH12426	Soybean	cytosol	39.29	74.17
CDY14235	Canola	cytosol	74.83	73.38
CDY51704	Canola	cytosol	77.26	72.77
CDX92883	Canola	cytosol	77.04	72.56
Bra010361.1-P	Field mustard	cytosol	76.38	72.38
CDY35198	Canola	cytosol	75.72	72.36
CDX97446	Canola	cytosol	74.17	72.26
CDY38379	Canola	cytosol	75.5	72.15
Bra011038.1-P	Field mustard	cytosol	76.6	72.14
AT1G03930.1	Thale cress	cytosol	74.39	71.55
CDY32520	Canola	cytosol	71.74	71.27
Bra032536.1-P	Field mustard	cytosol	71.3	70.99
CDY10089	Canola	cytosol	71.08	70.77
AT4G28540.1	Thale cress	cytosol	74.61	70.56
CDY54479	Canola	cytosol	74.17	70.44
CDY13126	Canola	cytosol	73.51	69.67
Bra027528.1-P	Field mustard	cytosol	73.51	69.67
AT5G44100.1	Thale cress	cytosol	72.85	69.33
CDY36972	Canola	cytosol	73.07	69.1
KRH02686	Soybean	nucleus	60.71	60.57
Bra024191.1-P	Field mustard	cytosol	40.4	60.4
KRH19210	Soybean	nucleus	60.49	60.35
KRH23272	Soybean	cytosol	60.71	58.26
KRH37421	Soybean	nucleus	58.5	58.11
KRH10045	Soybean	nucleus	60.04	57.75
KRH39332	Soybean	cytosol	54.08	57.51
KRH76321	Soybean	cytosol	54.75	57.41
KRH41527	Soybean	nucleus	54.08	56.98
KRH60238	Soybean	cytosol	53.86	56.74
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.79	56.47
KRH44105	Soybean	cytosol	58.94	56.09
KRH62054	Soybean	cytosol	51.43	54.57
KRH52721	Soybean	cytosol	50.99	53.97
KRH04915	Soybean	cytosol	49.01	52.24
KRH47076	Soybean	cytosol	43.27	51.99
KRH12422	Soybean	cytosol, nucleus	28.26	44.44
KRH52778	Soybean	nucleus	32.45	24.26
KRH62090	Soybean	cytosol	32.23	21.66
KRH46874	Soybean	nucleus	31.79	21.43
KRH01814	Soybean	nucleus	31.79	21.43
KRG93028	Soybean	cytosol	31.57	21.38
KRH36274	Soybean	nucleus	31.35	21.13
KRH62093	Soybean	nucleus	32.67	20.85
KRH44285	Soybean	nucleus	32.45	20.68
KRH47219	Soybean	nucleus	32.67	20.47
KRH06716	Soybean	nucleus	31.13	19.89

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100789031	MapMan:18.4.4.1	EMBL:ACUP02008191	EnsemblPlantsGene:GLYMA_13G125000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1LYM5	InterPro:IPR000719	EnsemblPlants:KRH19588	ProteinID:KRH19588	ProteinID:KRH19588.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF114	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000233C070	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:23841487..23849884

Molecular Weight (calculated)

51814.9 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.650

Length

453 amino acids

Sequence
(BLAST)

001: MEHVIGGKFK LGRKIGSGSF GELYLGVNVQ TGEEVAVKLE PVKTRHPQLH YESKLYMLLQ GGTGIPHLKW FGVEGDYNVM VIDLLGPSLE DLFNYCDRKF
101: TLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYAIDY GLAKKYRDLQ THRHIPYREN KNLTGTARYA SVNTHLGIEQ SRRDDLESLG
201: YVLMYFLKGS LPWQGLRAGT KKQKYDKISE TKVSTSIEVL CKSYPSEFVS YFQYCRSLQF EDKPDYSYLK RLFRDLFIRE GYQFDYIFDW TMLKYPQISG
301: SSRGRHGTGK AAMHAGPHVQ KAEKISVGKE IREKFSGAVE AFSRRNPANA SPCGDHTKHR SFEDVPVQKD LHYAQHNSTR YGSSSRRAMI SSNKPISSGD
401: HTGRQTITGS RPSGAHRIQP VYDTKQATYT RGGSIRGHRD DPLRNFELLN IRK

Best Arabidopsis Sequence Match ( AT4G28540.1 )
(BLAST)

001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK

Arabidopsis Description

CKL6Casein kinase 1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.