CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44285	Soybean	nucleus	94.88	96.48
KRH52778	Soybean	nucleus	73.03	87.13
GSMUA_Achr6P26340_001	Banana	cytosol	70.68	84.32
VIT_19s0085g00700.t01	Wine grape	cytosol	14.11	84.3
GSMUA_Achr9P06110_001	Banana	cytosol	69.29	82.54
Os01t0744300-01	Rice	cytosol, nucleus, plastid	67.5	81.74
TraesCS1B01G143100.4	Wheat	cytosol	67.77	80.72
EES19200	Sorghum	cytosol	67.63	80.56
GSMUA_Achr2P15650_001	Banana	cytosol	67.22	80.33
TraesCS1D01G130400.2	Wheat	cytosol	67.36	80.23
Os05t0200500-02	Rice	cytosol	67.36	80.23
Zm00001d037744_P001	Maize	cytosol	67.08	79.9
TraesCS1A01G123900.2	Wheat	cytosol	67.36	79.84
EES00121	Sorghum	cytosol	67.08	79.64
GSMUA_AchrUn_...	Banana	cytosol	40.66	78.61
Zm00001d039409_P004	Maize	cytosol	66.25	78.4
KRH62090	Soybean	cytosol	72.89	78.19
Zm00001d008863_P004	Maize	cytosol	54.36	77.98
TraesCS3A01G311600.3	Wheat	cytosol	65.01	77.43
GSMUA_Achr4P01010_001	Banana	plastid	73.17	77.34
HORVU3Hr1G027270.1	Barley	cytosol	64.87	77.27
TraesCS3B01G160600.1	Wheat	cytosol	65.01	76.67
TraesCS3D01G142700.1	Wheat	cytosol	65.01	76.67
KRH62093	Soybean	nucleus	74.27	75.63
Os01t0198200-01	Rice	cytosol, mitochondrion, nucleus, vacuole	66.25	75.31
KRH01814	Soybean	nucleus	69.43	74.7
OQU79450	Sorghum	nucleus	61.69	74.58
TraesCS3A01G275100.1	Wheat	cytosol	68.88	74.55
TraesCS3B01G308800.1	Wheat	cytosol	68.46	74.55
KRH46874	Soybean	nucleus	69.16	74.4
TraesCS3D01G275000.1	Wheat	cytosol	68.33	74.29
HORVU3Hr1G070920.2	Barley	mitochondrion	67.77	73.24
KRG93028	Soybean	cytosol	66.25	71.6
KRH36274	Soybean	nucleus	66.11	71.13
Zm00001d012761_P002	Maize	cytosol, mitochondrion, nucleus, plastid	66.25	70.75
GSMUA_Achr9P00060_001	Banana	cytosol	21.58	68.72
KRH06716	Soybean	nucleus	65.42	66.71
Solyc08g066400.1.1	Tomato	cytosol	30.71	66.67
GSMUA_AchrUn_...	Banana	cytosol	16.46	64.67
HORVU1Hr1G028450.16	Barley	cytosol	60.17	60.92
Solyc08g066410.1.1	Tomato	cytosol	28.91	60.58
GSMUA_Achr9P00070_001	Banana	extracellular	15.77	51.58
KRH12421	Soybean	cytosol	9.54	41.32
KRH12426	Soybean	cytosol	13.55	40.83
KRH34398	Soybean	nucleus	21.85	34.96
KRG92405	Soybean	cytosol	21.99	34.87
KRG95693	Soybean	cytosol	21.3	32.98
KRH67417	Soybean	nucleus	21.3	32.91
KRH02686	Soybean	nucleus	20.61	32.82
KRH19210	Soybean	nucleus	20.61	32.82
KRH19588	Soybean	cytosol, nucleus	20.47	32.67
KRH32213	Soybean	cytosol	20.33	32.52
KRH37421	Soybean	nucleus	19.92	31.58
KRH23272	Soybean	cytosol	20.61	31.57
KRH10045	Soybean	nucleus	20.47	31.42
KRH44105	Soybean	cytosol	20.33	30.88
KRH39332	Soybean	cytosol	18.12	30.75
KRH60238	Soybean	cytosol	18.26	30.7
KRH41527	Soybean	nucleus	18.12	30.47
KRH76321	Soybean	cytosol	17.84	29.86
KRH62054	Soybean	cytosol	17.15	29.04
KRH52721	Soybean	cytosol	17.15	28.97
KRH04915	Soybean	cytosol	17.01	28.94
KRH47076	Soybean	cytosol	14.66	28.12
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.41	26.67
KRH12422	Soybean	cytosol, nucleus	9.82	24.65

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100800869	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:ACUP02004142	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G016100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1KGJ5	InterPro:IPR000719	EnsemblPlants:KRH47219	ProteinID:KRH47219	ProteinID:KRH47219.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF73	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00023C6EC6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:1291632..1297512

Molecular Weight (calculated)

80758.2 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.606

Length

723 amino acids

Sequence
(BLAST)

001: MPVLRSGARK GRAAAKQQQQ EQQQQQQKQQ QQQHSPVVEG EAIATRTRRR RAAAAAAAAV PESNNNNNNN NTNNQQQQPE QVAVVNENVA IAVREEENNR
101: VAEEGVVGGG GAEREGVAEK EMGGCDSGGP SNDKANAAGE DDANAPQVPE KIQVGNSPWY KVERKLGKGG FGQVYVGRRT GGNLNERTGS GAVEVALKLE
201: HRTSKGCTYG PPYEWQVYNT LGGSHGVPQV HYKGRQGDYY VMVMDMLGPS LWDVWNNSNH HMTTEMVACI AIEAISILEK MHSRGYVHGD VKPENFLLGA
301: PGTPDEKKLF LVDLGLATKW RDSTTGSHVE YDQRPDVFRG TVRYASVHAH LGRTASRRDD LESLAYTLIF LLRGRLPWQG FQGENKGFLV CKKKMGTSPE
401: TLCCFSPLPF KQFVEHVVNL KFDEEPNYAK YISLFDGIVG PNPDIRPINT EGAQKLIGHK RGRLAMEEED DDQPKKKIRI GLPASQWISV YNARRPMKQR
501: YHYNVSDTRL SQHIEKGNED GLYISGVASC QNLWALIMDA GTGFTAQVYE LSPFFLHKEW IMEHWEKNYY ISAIAGAVNG SSLVVMSKGT QYLQQSYKVS
601: DSFPFKWINK KWREGFYVTS MATSGSRWGV VMSRGAGFSD QVVELDFLYP SEGIHKRWDC GYRITATAAT WDQAAFVLSV PRRKPLDETQ ETLRTSAFPS
701: THVKEKWAKN LYIASICYGR TVS

Best Arabidopsis Sequence Match ( AT5G18190.2 )
(BLAST)

001: MPELRSGARR LRQPSPQVTG QADNIELPPQ PVTRRRGGGG RGRGNAKGAA PPRPAGGVGR GRGIRLIDLE AEPCEVRPAV GEPAFNQVEA VAEKDIAMEG
101: GSAEKVVGVE EDSSTAPVPE RVQVGNSPVY KTERKLGKGG FGQVFVGRRV SGGSDRIGAD AIEVALKFEH RNSKGCNFGP PYEWQVYNTL NGCYGVPAVH
201: HKGRQGDFYI LVMDMLGPSL WDVWNSSGQS MSPNMVACIA VESISILEKL HMKGFVHGDV KPENFLLGQP GTADEKKLYL IDLGLASKWK DSHSGQHVEY
301: DQRPDVFRGT IRYASVHAHL GRTGSRRDDL ESLAYTLIFL LKGRLPWQGY QGDNKSFLVC KKKMSTSPEL MCCFCPPPFK LFLEAVTNMK FDEEPNYAKL
401: ISIFDSLIEQ CALSRPIKID GALKVGQKRG RMLLNLDEDE QPKKKIRIGS PACQWISVYN ARRPMKQRYH YNVADSRLHQ HVQKGNEDGL LISCVASAAN
501: LWALIMDAGT GFTSQVYELS TVFLHKDWIM EQWEKNYYIS SIAGSDNGNS LVVMSKGTSY TQQSYKVSDS FPFKWINKKW KEDFHVTSMT TAGNRWGVVM
601: SRNSGYSDQV VELDFLYPSD GIHRRWESGY RITSMAATAD QAAFILSVPK RKMMDETQET LRTTAFPSTH VKEKWAKNLY IASICFGRTV C

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FK52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.