CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95693	Soybean	cytosol	97.01	97.22
KRH19588	Soybean	cytosol, nucleus	83.76	86.53
KRH32213	Soybean	cytosol	83.55	86.5
KRG92405	Soybean	cytosol	77.56	79.61
KRH34398	Soybean	nucleus	76.28	78.98
KRH12421	Soybean	cytosol	27.78	77.84
KRH12426	Soybean	cytosol	38.89	75.83
CDY14235	Canola	cytosol	74.15	75.11
CDY51704	Canola	cytosol	76.5	74.43
CDX97446	Canola	cytosol	73.93	74.41
Bra010361.1-P	Field mustard	cytosol	75.85	74.27
CDY35198	Canola	cytosol	75.21	74.26
CDX92883	Canola	cytosol	76.28	74.22
CDY32520	Canola	cytosol	72.22	74.12
CDY38379	Canola	cytosol	75.0	74.05
Bra032536.1-P	Field mustard	cytosol	71.79	73.85
AT1G03930.1	Thale cress	cytosol	74.15	73.67
Bra011038.1-P	Field mustard	cytosol	75.64	73.6
AT4G28540.1	Thale cress	cytosol	75.21	73.49
CDY10089	Canola	cytosol	71.37	73.41
CDY54479	Canola	cytosol	73.29	71.91
AT5G44100.1	Thale cress	cytosol	72.86	71.64
CDY13126	Canola	cytosol	73.08	71.55
Bra027528.1-P	Field mustard	cytosol	73.08	71.55
CDY36972	Canola	cytosol	72.65	70.98
Bra024191.1-P	Field mustard	cytosol	40.6	62.71
KRH02686	Soybean	nucleus	59.83	61.67
KRH19210	Soybean	nucleus	59.83	61.67
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.91	60.39
KRH37421	Soybean	nucleus	57.91	59.43
KRH10045	Soybean	nucleus	59.19	58.81
KRH23272	Soybean	cytosol	59.19	58.69
KRH39332	Soybean	cytosol	52.99	58.22
KRH76321	Soybean	cytosol	53.63	58.1
KRH41527	Soybean	nucleus	53.21	57.91
KRH44105	Soybean	cytosol	58.55	57.56
KRH60238	Soybean	cytosol	52.78	57.44
KRH62054	Soybean	cytosol	50.85	55.74
KRH52721	Soybean	cytosol	50.64	55.37
KRH47076	Soybean	cytosol	43.8	54.38
KRH04915	Soybean	cytosol	47.22	52.0
KRH12422	Soybean	cytosol, nucleus	28.63	46.53
KRH52778	Soybean	nucleus	32.69	25.25
KRH62090	Soybean	cytosol	32.48	22.55
KRH62093	Soybean	nucleus	33.12	21.83
KRH01814	Soybean	nucleus	31.2	21.73
KRH46874	Soybean	nucleus	31.2	21.73
KRG93028	Soybean	cytosol	30.98	21.67
KRH44285	Soybean	nucleus	32.69	21.52
KRH36274	Soybean	nucleus	30.77	21.43
KRH47219	Soybean	nucleus	32.91	21.3
KRH06716	Soybean	nucleus	30.77	20.31

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100781494	MapMan:18.4.4.1	EMBL:ACUP02002057	EnsemblPlantsGene:GLYMA_03G164700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	UniProt:I1JP51	InterPro:IPR000719	EnsemblPlants:KRH67417	ProteinID:KRH67417	ProteinID:KRH67417.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF114	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0001FBD6B2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:37966036..37971826

Molecular Weight (calculated)

53531.8 Da

IEP (calculated)

10.226

GRAVY (calculated)

-0.739

Length

468 amino acids

Sequence
(BLAST)

001: MSSLMMDHVI GGKFKLGRKI GSGSFGELYI AVNIQTGEEV AVKLEPVKTK HPQLHYESKL YMLLQGGTGI PHLKWFGVEG DYNVMAIDLL GPSLEDLFNY
101: CNRKLTLKTV LMLADQLINR VEYMHSRGFL HRDIKPDNFL MGLGRKANQV YIIDYGLAKK YRDLQTHRHI PYRENKNLTG TARYASVNTH LGIEQSRRDD
201: LESLGYVLMY FLRGSLPWQG LKAGTKKQKY DKISEKKMST SLEGLCKSYP SEFVSYFQYC RTLRFEDKPD YSYLKRLFRD LFIREGYQFD YVFDWTILKY
301: PQIGGSSSRG RHESGKAAMH AGPSVQKPEK VSVGKEIREK FSGAVEAFSR RNPTSPSPRG DHSKRRSFEE VAVHKDVYHD QEKGRNSSRY GSSSRRPIIS
401: SSTRPSSSGD HTDSRTGRLT SSGSRQSATH RNIQPMHETK QPTYTRSGST RGNRDDPLRS FELLSIRK

Best Arabidopsis Sequence Match ( AT3G23340.1 )
(BLAST)

001: MDHVIGGKFK LGRKIGSGSF GELYIGINVQ TGEEVALKLE PVKTKHPQLH YESKVYMLLQ GGTGVPHIKW FGVEGNYNCM AIDLLGPSLE DLFNYCTRSF
101: SLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYIIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGIEQ SRRDDLESLG
201: YVLMYFIRGS LPWQGLKAGT KKQKYEKISE KKMLTPVEVL CKSYPSEFTS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQSGS
301: ISKPRPNPKP ALDPPGPSAE RNEKPIVGQD LRERFSGAVE AFARRNVPSH GIRPKHIFSD DASKEVQVSE KTRNEIATKM AVMSSSQPGS SGELSENRSS
401: KLFSSSAQKI QPVQETKLSA RLGRDDGLRS FDMLTIGSGK RK

Arabidopsis Description

CKL10Casein kinase 1-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.