CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02686	Soybean	nucleus	99.34	99.34
KRH12421	Soybean	cytosol	35.68	97.01
GSMUA_Achr3P32290_001	Banana	cytosol	30.4	93.88
KRH12426	Soybean	cytosol	46.26	87.5
KRH37421	Soybean	nucleus	85.68	85.31
VIT_11s0016g01950.t01	Wine grape	cytosol	86.56	82.91
KRH10045	Soybean	nucleus	82.38	79.41
KRH23272	Soybean	cytosol	81.5	78.39
Solyc03g121820.2.1	Tomato	cytosol, nucleus	81.06	78.3
PGSC0003DMT400006625	Potato	cytosol	80.62	77.71
KRH44105	Soybean	cytosol	79.07	75.42
PGSC0003DMT400012385	Potato	cytosol	76.65	74.52
KRH12422	Soybean	cytosol, nucleus	47.14	74.31
Solyc06g062790.2.1	Tomato	cytosol, nucleus	76.43	74.3
KRH47076	Soybean	cytosol	59.47	71.62
KRH34398	Soybean	nucleus	61.67	61.95
KRG92405	Soybean	cytosol	61.45	61.18
KRH19588	Soybean	cytosol, nucleus	60.35	60.49
KRG95693	Soybean	cytosol	62.11	60.39
KRH32213	Soybean	cytosol	59.91	60.18
KRH41527	Soybean	nucleus	56.83	60.0
KRH76321	Soybean	cytosol	57.05	59.95
KRH67417	Soybean	nucleus	61.67	59.83
KRH60238	Soybean	cytosol	56.61	59.77
KRH39332	Soybean	cytosol	55.73	59.39
KRH62054	Soybean	cytosol	52.42	55.74
KRH52721	Soybean	cytosol	51.98	55.14
KRH04915	Soybean	cytosol	50.0	53.41
KRH66363	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.97	49.8
KRH52778	Soybean	nucleus	33.48	25.08
KRH62090	Soybean	cytosol	32.38	21.81
KRG93028	Soybean	cytosol	31.94	21.67
KRH36274	Soybean	nucleus	31.72	21.43
KRH46874	Soybean	nucleus	31.5	21.28
KRH01814	Soybean	nucleus	31.5	21.28
KRH62093	Soybean	nucleus	33.04	21.13
KRH44285	Soybean	nucleus	32.82	20.96
KRH06716	Soybean	nucleus	32.6	20.87
KRH47219	Soybean	nucleus	32.82	20.61

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100785851	MapMan:18.4.4.1	UniProt:A0A0R0GL93	EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G105900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
InterPro:IPR000719	EnsemblPlants:KRH19210	ProteinID:KRH19210	ProteinID:KRH19210.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000151E3F2	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:22028736..22034934

Molecular Weight (calculated)

50898.5 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.542

Length

454 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYRILQ GGTGIPNVRW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFIH SKSFLHRDIK PDNFLMGLGR RANQVYAIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYEKISE KKVSTSIEAL CRGYPTEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: ATPPTRAIGP SAGTSSGMPP AVTNADRHTG GEEGRPPALV SVDSSRRRMS GPILNTLSSA NALGQSSGSS RRVAVSSSRD AFVGAESDIR TRTAEASPGA
401: AHRALSGQRS SPIGSSDPKR VVSSGRNASH VKNYDTALRG MEGLQLENDE RTHY

Best Arabidopsis Sequence Match ( AT4G26100.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIH TNEELAIKLE NVKTKHPQLL YESKLYRILQ GGTGVPNVKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKSVLMLAD QMINRVEFFH SKSFLHRDLK PDNFLMGLGR RANQVYIIDF GLAKKYRDST THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YILMYFLKGS LPWQGLKAGT KKQKYERISE KKVSTSIEAL CRGYPSEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: TAPPSRALNP AVGTSAALPP GISNIDRYTG EEEGRPHMES SRRRVSGALD NSGNISNQPT SSSARDSMIP SSSLFAQSAG SSRRVTAVSG SRDNFPGSEE
401: LLQRSRTGDV SRGVIPRNSP GEAGKSTRRH YESVVKGIDN LQVSDEHHPH

Arabidopsis Description

CKL1CKL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.