Factsheet for Solyc03g121820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc06g074500.1.1
Solyc11g066930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	Solyc06g074500.1.1	AT2G27770.1	21798944
AT1G72710.1	Solyc11g066930.1.1	AT2G27770.1	21798944
AT4G26100.1	Solyc01g097790.2.1	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006625	Potato	cytosol	98.51	98.3
KRH12421	Soybean	cytosol	33.19	93.41
GSMUA_Achr3P32290_001	Banana	cytosol	28.94	92.52
Solyc06g062790.2.1	Tomato	cytosol, nucleus	85.96	86.51
VIT_09s0002g01740.t01	Wine grape	cytosol	83.19	83.01
KRH19210	Soybean	nucleus	78.3	81.06
KRH02686	Soybean	nucleus	78.3	81.06
Bra035646.1-P	Field mustard	cytosol	61.49	80.28
KRH37421	Soybean	nucleus	76.17	78.51
KRH10045	Soybean	nucleus	78.51	78.34
KRH23272	Soybean	cytosol	78.51	78.18
Solyc05g016410.2.1	Tomato	cytosol, nucleus	77.66	77.83
Bra016039.1-P	Field mustard	cytosol	76.81	77.63
CDX96430	Canola	cytosol	76.81	77.63
Solyc07g040720.2.1	Tomato	nucleus	77.87	77.54
CDY49859	Canola	cytosol	76.6	77.42
EES01354	Sorghum	cytosol	77.23	77.23
AT1G72710.1	Thale cress	cytosol	76.38	77.2
AT5G57015.1	Thale cress	cytosol	71.28	77.01
Bra008043.1-P	Field mustard	cytosol	76.17	76.99
Bra006839.1-P	Field mustard	cytosol	70.43	76.98
CDX88601	Canola	cytosol	70.43	76.98
CDY11892	Canola	cytosol	70.21	76.74
CDY53866	Canola	cytosol	72.77	76.68
CDY54387	Canola	cytosol	70.64	76.67
HORVU3Hr1G066800.6	Barley	cytosol	77.23	76.58
Bra002771.1-P	Field mustard	cytosol	70.43	76.44
CDY38255	Canola	cytosol	69.79	76.28
CDX72938	Canola	cytosol	76.6	76.11
CDY32908	Canola	cytosol	67.66	75.89
KRH44105	Soybean	cytosol	76.81	75.84
CDY20695	Canola	cytosol	67.45	75.84
AT4G26100.1	Thale cress	cytosol	72.55	75.78
TraesCS3D01G252000.2	Wheat	cytosol	75.96	75.48
TraesCS3B01G281100.2	Wheat	cytosol	75.96	75.48
TraesCS3A01G251600.2	Wheat	cytosol	75.74	75.26
CDX94377	Canola	cytosol	73.62	75.22
Bra013949.1-P	Field mustard	cytosol	73.4	75.0
KRH47076	Soybean	cytosol	57.66	71.88
Zm00001d011696_P002	Maize	cytosol	66.17	70.2
Solyc09g090230.1.1	Tomato	cytosol, nucleus	17.23	69.83
CDY69293	Canola	cytosol	51.28	69.25
KRH12422	Soybean	cytosol, nucleus	41.06	67.01
Zm00001d043693_P002	Maize	cytosol	65.96	66.81
Solyc12g007280.1.1	Tomato	cytosol	51.49	64.53
Solyc09g066440.2.1	Tomato	cytosol	61.91	63.26
Solyc06g008320.2.1	Tomato	cytosol, nucleus	61.28	63.02
Solyc06g083830.2.1	Tomato	cytosol	60.43	61.87
Solyc06g053560.2.1	Tomato	cytosol	57.45	61.09
Solyc08g066870.2.1	Tomato	cytosol, nucleus	49.57	60.99
Solyc09g090250.2.1	Tomato	nucleus	58.94	59.7
Solyc09g090240.1.1	Tomato	cytosol	24.26	58.46
CDX82685	Canola	cytosol, nucleus, vacuole	23.62	35.69
Solyc08g066410.1.1	Tomato	cytosol	19.57	26.67
Solyc12g100310.1.1	Tomato	nucleus	29.15	22.76
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	31.28	21.24
Solyc10g080700.1.1	Tomato	nucleus	31.7	21.02
Solyc12g095830.1.1	Tomato	nucleus	31.28	20.85
Solyc01g006120.2.1	Tomato	nucleus	29.57	20.38
Solyc08g066400.1.1	Tomato	cytosol	10.64	15.02

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740
GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4BMY1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc03g121820.2	EnsemblPlants:Solyc03g121820.2.1
UniParc:UPI00027655B7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:69859405..69865725

Molecular Weight (calculated)

52882.0 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.587

Length

470 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNVQ TNEEVAIKLE NVKTKHPQLL YESKLYKILQ GGTGIPNLKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFVH AKSFLHRDIK PDNFLMGLGR RANQVYIIDF GLAKKFRDST THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYERISE KKVSTSIETL CRGYPTEFAS YFHYCRSLRF EDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: ANPPSRALGG TAGPSSGMPH ALANAERPSG GEEGRPAGWS GNLARNRNTG LQFNSGSLAK QKGTVANDLS MGKELSSSSF FRTSGSTRRP AVSSSRDPVI
401: TGVEPDPSHI RKTDASPGQL RKTSSVAQRS SPVMSSDQKR SSSTRMDKNF EAALKGIEGL SVKNDERLHY

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.