Factsheet for Solyc09g090250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g076680.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc06g074500.1.1
Solyc07g065490.2.1
Solyc10g006000.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g066930.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23340.1	Solyc02g076680.2.1	AT1G29240.1	21798944
AT3G23340.1	Solyc06g074500.1.1	AT2G27770.1	21798944
AT3G23340.1	Solyc11g066930.1.1	AT2G27770.1	21798944
AT3G23340.1	Solyc02g076680.2.1	AT4G18630.1	21798944
AT4G14340.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G14340.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G14340.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G14340.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G14340.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G14340.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G14340.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G14340.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G14340.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G14340.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G14340.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G14340.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G14340.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G14340.1	Solyc10g006000.2.1	AT4G26630.1	25387881
AT4G14340.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G14340.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G14340.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G14340.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G14340.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053560.2.1	Tomato	cytosol	82.11	86.2
VIT_05s0049g01240.t01	Wine grape	cytosol	85.99	85.99
KRH34398	Soybean	nucleus	81.9	84.07
KRG92405	Soybean	cytosol	82.33	83.77
Solyc09g066440.2.1	Tomato	cytosol	81.03	81.74
Solyc06g083830.2.1	Tomato	cytosol	80.82	81.7
Solyc06g008320.2.1	Tomato	cytosol, nucleus	80.39	81.62
Solyc09g090230.1.1	Tomato	cytosol, nucleus	20.26	81.03
Bra023732.1-P	Field mustard	cytosol	72.63	77.83
CDY18127	Canola	cytosol	72.63	77.83
CDY66573	Canola	cytosol	72.41	77.6
AT3G23340.1	Thale cress	cytosol	72.41	76.02
CDY12062	Canola	cytosol	72.2	74.94
CDY12761	Canola	cytosol	71.55	74.44
Bra010762.1-P	Field mustard	cytosol	72.41	74.34
CDX90256	Canola	cytosol	72.41	74.34
AT4G14340.1	Thale cress	cytosol	73.06	74.18
CDY49413	Canola	cytosol	71.98	73.73
Solyc12g007280.1.1	Tomato	cytosol	51.94	64.27
Solyc09g090240.1.1	Tomato	cytosol	26.29	62.56
Solyc03g121820.2.1	Tomato	cytosol, nucleus	59.7	58.94
Solyc08g066870.2.1	Tomato	cytosol, nucleus	48.49	58.9
Solyc06g062790.2.1	Tomato	cytosol, nucleus	58.41	58.03
Solyc05g016410.2.1	Tomato	cytosol, nucleus	57.97	57.36
Solyc07g040720.2.1	Tomato	nucleus	57.33	56.36
Solyc08g066410.1.1	Tomato	cytosol	18.97	25.51
Solyc12g100310.1.1	Tomato	nucleus	30.6	23.59
Solyc01g006120.2.1	Tomato	nucleus	31.03	21.11
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	31.47	21.1
Solyc12g095830.1.1	Tomato	nucleus	31.9	20.99
Solyc10g080700.1.1	Tomato	nucleus	30.82	20.17
Solyc08g066400.1.1	Tomato	cytosol	10.99	15.32

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4CW51
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF178	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc09g090250.2	EnsemblPlants:Solyc09g090250.2.1	UniParc:UPI000276CB6D	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:69783716..69789223

Molecular Weight (calculated)

52873.0 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.656

Length

464 amino acids

Sequence
(BLAST)

001: MDHVVGGKFK LGRKIGSGSF GELYLGVNVQ TGEEVAVKLE STKTKHPQLH YESKLYMLLQ GGTGIQHIKW LGVEGEYNAM VIDLFGPSWE DLFKYCNWRF
101: TLKTALMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYIIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDRISE KKMLTPIEVL CKSYPSEFIS YFHYCRSLRF DDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TILKYPQIGS
301: SSRARQPIAR LPVNPGPSIE RPEKIPVRQE IKDRFSGAVE AFSRRNVSGT GLQGDHLRHH RSSDDVPSSK DVQADAERGR VSRTGSTSRR AVMGSSRPSS
401: SGEPTDNRSG RLGSSSGRIS TTQRVQPGFE SKSSSFTRAT ATRGGRDDAL RSFELLTIGT GRRK

Best Arabidopsis Sequence Match ( AT4G14340.1 )
(BLAST)

001: MDRNQKMDHV IGGKFKLGRK LGSGSFGELY LGINIQTGEE VAVKLEPVKT RHPQLQYESK IYMFLQGGTG VPHLKWFGVE GEYSCMVIDL LGPSLEDLFN
101: YCKRIFSLKS VLMLADQLIC RVEYMHSRGF LHRDIKPDNF LMGLGRRANQ VYIIDYGLAK KYKDLQTQKH IPYRENKNLT GTARYASVNT HLGIEQSRRD
201: DLESLGYVLM YFLRGSLPWQ GLKAGTKKQK YDKISEKKML TSVETLCKSY PSEFTSYFHY CRSLRFEDKP DYSYLRRLFR DLFIREGYQL DYVFDWTISK
301: YPQIGSSSRP RPTPRPALDP PGPPAERAEK PTVGQDLRGR FTGAIEAFTR RNVSSQGALG DRSRHRSSDD IPSSAKEVHE SRNGSTSKRG VISSTRPGSS
401: AEPSENHSSR LFSSGSRHAT TQRVPQSYES AAAARPGHED AIRNFELLTI GSGKKRK

Arabidopsis Description

CKL11Casein kinase 1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q39050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.