Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g090230.1.1 | |
| Solyc09g090240.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | Solyc09g090230.1.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | Solyc09g090240.1.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018411 | Potato | cytosol | 96.04 | 96.04 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 68.32 | 69.23 |
| KRH26585 | Soybean | plastid | 61.39 | 61.79 |
| KRH22720 | Soybean | plastid | 60.07 | 60.26 |
| KRH25175 | Soybean | cytosol | 61.39 | 58.68 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 60.73 | 57.68 |
| KRH30504 | Soybean | plastid | 61.72 | 57.54 |
| AT2G27770.1 | Thale cress | plastid | 55.78 | 52.81 |
| CDX77134 | Canola | cytosol, plastid | 55.45 | 52.01 |
| Bra034367.1-P | Field mustard | plastid | 55.45 | 51.69 |
| CDY30531 | Canola | plastid | 54.13 | 50.0 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 47.19 | 48.64 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 44.88 | 44.59 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 42.9 | 44.22 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 42.24 | 43.39 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 43.23 | 42.81 |
| GSMUA_Achr11P... | Banana | plastid | 40.26 | 42.07 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 36.96 | 38.89 |
| Solyc01g097790.2.1 | Tomato | cytosol | 37.62 | 38.13 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 35.31 | 35.31 |
| TraesCS7A01G277900.1 | Wheat | plastid | 30.03 | 30.64 |
| TraesCS7D01G277700.1 | Wheat | plastid | 30.36 | 30.46 |
| TraesCS5B01G130100.1 | Wheat | plastid | 31.35 | 29.97 |
| Solyc03g112130.1.1 | Tomato | cytosol | 31.35 | 29.87 |
| TraesCS5A01G130200.1 | Wheat | plastid | 31.02 | 29.84 |
| TraesCS7B01G175700.1 | Wheat | plastid | 29.37 | 29.47 |
| HORVU7Hr1G058790.3 | Barley | plastid | 29.37 | 29.37 |
| HORVU5Hr1G041450.1 | Barley | plastid | 31.02 | 29.19 |
| TraesCS5D01G137700.1 | Wheat | plastid | 30.69 | 28.97 |
| Os12t0149000-01 | Rice | plastid | 31.02 | 28.66 |
| KXG22966 | Sorghum | plastid | 30.36 | 28.13 |
| Zm00001d052520_P001 | Maize | plastid | 29.37 | 27.9 |
| Zm00001d004919_P001 | Maize | plastid | 29.04 | 27.24 |
| Os04t0407500-00 | Rice | cytosol, plastid | 22.44 | 27.2 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 29.7 | 27.11 |
| OQU82880 | Sorghum | plastid | 29.37 | 27.05 |
| Zm00001d025337_P001 | Maize | cytosol | 30.69 | 26.96 |
| Zm00001d031962_P001 | Maize | plastid | 28.05 | 26.9 |
| TraesCS2B01G308700.1 | Wheat | cytosol | 29.37 | 26.57 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 30.03 | 26.45 |
| TraesCS4A01G183900.1 | Wheat | plastid | 27.39 | 26.35 |
| TraesCS4B01G134800.1 | Wheat | plastid | 27.39 | 26.27 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 29.04 | 25.96 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 29.04 | 25.58 |
| TraesCS4D01G129600.1 | Wheat | plastid | 26.4 | 25.16 |
| TraesCS4B01G012200.1 | Wheat | cytosol | 29.04 | 24.93 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 28.71 | 24.79 |
| KXG26216 | Sorghum | cytosol | 30.36 | 24.66 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 28.71 | 24.58 |
| Solyc08g028780.1.1 | Tomato | mitochondrion | 26.07 | 23.3 |
| Solyc12g044670.1.1 | Tomato | plastid | 23.43 | 23.05 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 24.09 | 22.96 |
| Solyc12g015900.1.1 | Tomato | cytosol | 22.44 | 22.82 |
| Solyc01g097830.2.1 | Tomato | cytosol, nucleus, peroxisome | 25.74 | 22.54 |
Protein Annotations
| EnsemblPlants:Solyc06g074500.1.1 | EnsemblPlantsGene:Solyc06g074500.1 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF10 | PFAM:PF05910 |
| SEG:seg | UniParc:UPI00027665AC | UniProt:K4C9G8 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6:-:46094531..46095442
Molecular Weight (calculated)
34546.6 Da
IEP (calculated)
8.549
GRAVY (calculated)
-0.190
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFASCFNE YAVQVSDNTS CSSYSNSACI PPSIIPSVQN TVNCLYKVNL SNKKHVLITI SWCKTNVTQG LSVHFGDDHP NVFKLNTNTR LFRKKKGSKS
101: MDLDHFKVEI IWDLCGARYL SSGPEPIDGY YVLIIVDSQL GVILGDMAEE ASLRKLKNGI PMAKFSLVSR QEHFSGNTIY STKAQFCDNG NLHDVLIRCN
201: GENDGLKHPV LSVYIDKKMV IRVKRLQWNF RGNQSIFLDG LLIDLMWNVH DWFFNPASGI ALFMFRTRSG MDSRLWLDEK DKFLIKDQEK IEFSLLIYAS
301: KTT
101: MDLDHFKVEI IWDLCGARYL SSGPEPIDGY YVLIIVDSQL GVILGDMAEE ASLRKLKNGI PMAKFSLVSR QEHFSGNTIY STKAQFCDNG NLHDVLIRCN
201: GENDGLKHPV LSVYIDKKMV IRVKRLQWNF RGNQSIFLDG LLIDLMWNVH DWFFNPASGI ALFMFRTRSG MDSRLWLDEK DKFLIKDQEK IEFSLLIYAS
301: KTT
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.