Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G290200.1 | Wheat | cytosol | 97.61 | 98.49 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 96.72 | 95.58 |
| Os04t0407500-00 | Rice | cytosol, plastid | 59.7 | 80.0 |
| Zm00001d025337_P001 | Maize | cytosol | 77.91 | 75.65 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 77.61 | 75.58 |
| KXG26216 | Sorghum | cytosol | 80.0 | 71.85 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 40.3 | 45.92 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 41.19 | 45.25 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 40.9 | 44.77 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 38.21 | 43.39 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 36.42 | 42.36 |
| GSMUA_Achr11P... | Banana | plastid | 34.33 | 39.66 |
| TraesCS5B01G130100.1 | Wheat | plastid | 36.42 | 38.49 |
| TraesCS4B01G134800.1 | Wheat | plastid | 34.33 | 36.39 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 32.24 | 36.12 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 31.94 | 35.55 |
| KRG96144 | Soybean | nucleus | 31.64 | 34.53 |
| TraesCS7B01G175700.1 | Wheat | plastid | 30.75 | 34.11 |
| KRH67854 | Soybean | cytosol | 31.34 | 34.09 |
| KRH26585 | Soybean | plastid | 30.45 | 33.89 |
| KRH22720 | Soybean | plastid | 30.45 | 33.77 |
| TraesCS2B01G223900.1 | Wheat | plastid | 28.36 | 33.57 |
| KRH25175 | Soybean | cytosol | 31.04 | 32.81 |
| CDX79683 | Canola | cytosol | 30.15 | 31.86 |
| CDX84556 | Canola | cytosol | 30.45 | 31.78 |
| Bra023071.1-P | Field mustard | cytosol | 30.45 | 31.78 |
| TraesCS4B01G012200.1 | Wheat | cytosol | 33.43 | 31.73 |
| KRH30504 | Soybean | plastid | 30.45 | 31.38 |
| PGSC0003DMT400018411 | Potato | cytosol | 28.06 | 31.02 |
| PGSC0003DMT400006889 | Potato | nucleus | 14.03 | 30.72 |
| CDX77134 | Canola | cytosol, plastid | 29.55 | 30.65 |
| AT2G27770.1 | Thale cress | plastid | 28.96 | 30.31 |
| Solyc06g074500.1.1 | Tomato | cytosol | 26.57 | 29.37 |
| AT2G36470.1 | Thale cress | nucleus | 28.66 | 29.36 |
| Bra034367.1-P | Field mustard | plastid | 28.36 | 29.23 |
| TraesCS5B01G465500.1 | Wheat | plastid | 29.25 | 29.17 |
| CDY30531 | Canola | plastid | 28.36 | 28.96 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 25.07 | 28.57 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 25.97 | 27.27 |
| CDY33155 | Canola | cytosol | 30.45 | 25.5 |
| TraesCS3B01G451100.1 | Wheat | plastid | 23.88 | 25.0 |
| TraesCS1B01G032400.1 | Wheat | cytosol | 22.69 | 24.92 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 20.3 | 21.79 |
| TraesCS5B01G224600.1 | Wheat | plastid | 25.97 | 21.01 |
| TraesCS7B01G048400.1 | Wheat | plastid | 24.48 | 20.87 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G308700.1 | EnsemblPlantsGene:TraesCS2B01G308700 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF16 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:441873067..441874074
Molecular Weight (calculated)
35364.5 Da
IEP (calculated)
8.394
GRAVY (calculated)
-0.167
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDLVSCFSE HAVRISDVAC SGSAAANAAA AAAAGPADGG GRAAGISAVT TVYRSRLSAS GKDLLVDVTW ARSPDGPALS VAVHDAGAPR HRAAAAAPRH
101: LHRRKGSGTF TAGSCVVGVF WDYAAARYGA GPEPVSGFYV AVVADAEFVL LLGDMSRGYV ERLHGGIPVA ESRMARRRER FVGCGCWSTK ARFLESGAEH
201: EIGVGLEGDT EAWVTVDGRK VVQLRRLRWN FRGSHTLILD GGAPVDMTWD LHGWLFHAID PSASSSSAVF TFHARGASET RLWMEDDGAA SSSGDSDKEH
301: EKPVAPARGQ RQKQGPSGQG FCLLIQGFRS SSKIT
101: LHRRKGSGTF TAGSCVVGVF WDYAAARYGA GPEPVSGFYV AVVADAEFVL LLGDMSRGYV ERLHGGIPVA ESRMARRRER FVGCGCWSTK ARFLESGAEH
201: EIGVGLEGDT EAWVTVDGRK VVQLRRLRWN FRGSHTLILD GGAPVDMTWD LHGWLFHAID PSASSSSAVF TFHARGASET RLWMEDDGAA SSSGDSDKEH
301: EKPVAPARGQ RQKQGPSGQG FCLLIQGFRS SSKIT
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.