CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79683	Canola	cytosol	66.0	83.28
CDX84556	Canola	cytosol	66.5	82.87
AT2G36470.1	Thale cress	nucleus	62.5	76.45
KRH67854	Soybean	cytosol	34.25	44.48
VIT_08s0007g03840.t01	Wine grape	nucleus	33.0	43.85
KRG96144	Soybean	nucleus	33.5	43.65
PGSC0003DMT400006889	Potato	nucleus	15.5	40.52
CDX77134	Canola	cytosol, plastid	31.5	39.01
Solyc09g009280.1.1	Tomato	cytosol, peroxisome, plastid	28.25	38.44
CDY30531	Canola	plastid	31.0	37.8
GSMUA_Achr3P03050_001	Banana	nucleus	27.25	37.07
GSMUA_Achr2P20270_001	Banana	cytosol	26.25	34.31
GSMUA_Achr8P29560_001	Banana	nucleus	25.25	34.24
GSMUA_Achr10P...	Banana	nucleus, plastid	26.0	34.1
GSMUA_Achr8P07610_001	Banana	cytosol	24.0	33.33
GSMUA_Achr11P...	Banana	plastid	23.75	32.76
Zm00001d052520_P001	Maize	plastid	25.0	31.35
TraesCS5B01G130100.1	Wheat	plastid	24.25	30.6
TraesCS2B01G308700.1	Wheat	cytosol	25.5	30.45
Zm00001d025337_P001	Maize	cytosol	26.25	30.43
TraesCS2D01G290200.1	Wheat	cytosol	25.25	30.42
OQU82880	Sorghum	plastid	25.0	30.4
TraesCS5D01G137700.1	Wheat	plastid	24.25	30.22
TraesCS5A01G130200.1	Wheat	plastid	23.75	30.16
Zm00001d004919_P001	Maize	plastid	24.25	30.03
HORVU5Hr1G041450.1	Barley	plastid	24.0	29.81
KXG26216	Sorghum	cytosol	27.25	29.22
TraesCS2A01G292300.1	Wheat	cytosol	24.5	28.91
TraesCS4A01G183900.1	Wheat	plastid	22.75	28.89
Os04t0407500-00	Rice	cytosol, plastid	18.0	28.8
TraesCS4B01G134800.1	Wheat	plastid	22.75	28.8
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	24.75	28.78
CDY72112	Canola	cytosol, peroxisome, plastid	20.25	28.72
TraesCS4D01G129600.1	Wheat	plastid	22.75	28.62
KXG22966	Sorghum	plastid	23.25	28.44
Os12t0149000-01	Rice	plastid	23.25	28.35
CDY50761	Canola	cytosol, peroxisome, plastid	20.25	28.22
CDY30020	Canola	cytosol, plastid	19.25	27.3
CDY21108	Canola	plastid	19.0	26.95
CDY00013	Canola	cytosol, plastid	19.5	26.44
TraesCS7A01G277900.1	Wheat	plastid	19.25	25.93
CDX86191	Canola	plastid	18.75	25.6
TraesCS7D01G277700.1	Wheat	plastid	19.25	25.5
HORVU7Hr1G058790.3	Barley	plastid	19.25	25.41
CDY52485	Canola	plastid	18.5	25.26
TraesCS7B01G175700.1	Wheat	plastid	19.0	25.17
Zm00001d031962_P001	Maize	plastid	19.25	24.37
CDY27882	Canola	nucleus	16.75	23.02
CDY00849	Canola	nucleus	16.75	23.02
CDY51100	Canola	cytosol	19.5	22.94
CDX85733	Canola	cytosol, nucleus, plastid	19.25	22.45
CDY19961	Canola	plastid	16.25	21.24
CDX76763	Canola	plastid	18.5	21.2
CDY00069	Canola	plastid	16.25	21.1
CDY48744	Canola	mitochondrion, plastid	16.0	21.05
CDY66553	Canola	cytosol	14.75	20.92
CDY05690	Canola	mitochondrion, plastid	15.5	20.67
HORVU4Hr1G001870.2	Barley	cytosol	17.75	20.64
CDX69793	Canola	nucleus	19.25	20.48
CDX82547	Canola	cytosol	14.75	20.27
CDX97072	Canola	nucleus	19.5	20.16
TraesCS4A01G302100.1	Wheat	cytosol	17.75	20.06
TraesCS4D01G010300.1	Wheat	cytosol	17.5	19.94
TraesCS4B01G012200.1	Wheat	cytosol	17.5	19.83
CDX86317	Canola	plastid	14.75	19.22
CDX85324	Canola	plastid	13.25	19.06
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	19.25	17.34
CDY56275	Canola	cytosol	6.5	16.99

Protein Annotations

EnsemblPlants:CDY33155	EnsemblPlantsGene:GSBRNA2T00053862001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF16	PFAM:PF05910
ProteinID:CDY33155	ProteinID:CDY33155.1	SEG:seg	UniParc:UPI0004EE899E	UniProt:A0A078H3E9	MapMan:35.2

Description

BnaC04g08840DBnaC04g08840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3E9]

Coordinates

chrLK032308:-:6381..8106

Molecular Weight (calculated)

44476.5 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.291

Length

400 amino acids

Sequence
(BLAST)

001: MRGLVACYSE HAINVSDAYC SGPSNHSNYI SPTLPPSIPD TVTTTYKSHL PSSDKFVSVS LTWSDNLTIV ISTQPKSYSV SLKKPKGSKK LTSSSGSLNA
101: EILWDLTGAE YDNSGPEPTR GFFVAVVVRG GCRVIIRWGH TILFHYLRVG DVRDTSSWRV SRTEGFSGAC WLSTKARFSD AGAKHEIQIQ CGGGDGGGEE
201: GYLWKLKSPE TMSVWVDKKK VFQVKKLKWN FRGNQTMFFD GMLIDMMWDL HDWFFRETAS LSSTSSSSSS SSSSSSPPCA VFMFRRRSGL DSRLWLEEDE
301: EESKKIGDIC VNLPLITAKP DIEIVVDLLN LLKLEKSAVE KPFNSTNNSS GNGYFNREAF RRIWNIQTWI SCTSSSTALN VYKTWINASY SGISSITPLL

Best Arabidopsis Sequence Match ( AT2G36470.1 )
(BLAST)

001: MRGLAACYSE HAIKVSDTYC SGPSNHSYIS PTLPPSIPDT VTTTYRSNLP SSDKPVSVSL TWSDNLTVVI STPPKSYSVS LRKPKGSRKL TSSSGSLNAE
101: ILWDLSEAEY ENNGPEPIRR FFVVVVVNSE ITLGVGDVDH ERDTSSSSSW RVSKTERFSG TCWLTTKAQF SDVGRKHEIQ IQCGGGGGGG GEEGYLWKVK
201: SPETMSVYVD KRKVFSVKKL KWNFRGNQTM FFDGMLIDMM WDLHDWFYKE TLSSVSTSSS SKTASSSSSS STSSSTPPCA VFMFRRRSGL DSRLWIDEDE
301: QESEMKKNIG SRDEKHSFSL IICASKK

Arabidopsis Description

DUF868 family protein, putative (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SJQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.