CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	99.2	96.13
CDX97072	Canola	nucleus	94.95	92.25
AT5G11000.1	Thale cress	cytosol, plastid	86.97	84.06
CDX85733	Canola	cytosol, nucleus, plastid	72.07	79.01
CDY51100	Canola	cytosol	71.01	78.53
PGSC0003DMT400068894	Potato	plastid	45.74	49.28
Solyc08g028780.1.1	Tomato	mitochondrion	44.15	48.97
KRH52365	Soybean	plastid	42.55	48.05
KRH61697	Soybean	plastid	37.77	45.66
CDY56275	Canola	cytosol	18.35	45.1
KRH15788	Soybean	plastid	39.1	42.98
KRH05263	Soybean	mitochondrion, plastid	38.83	42.94
CDX76763	Canola	plastid	38.03	40.97
GSMUA_Achr9P13220_001	Banana	mitochondrion, peroxisome, plastid	35.9	35.53
CDY72112	Canola	cytosol, peroxisome, plastid	26.33	35.11
Zm00001d050436_P001	Maize	plastid	37.23	34.31
CDY50761	Canola	cytosol, peroxisome, plastid	26.06	34.15
TraesCS5A01G226100.1	Wheat	plastid	37.5	34.06
TraesCS5B01G224600.1	Wheat	plastid	37.5	34.06
TraesCS5D01G233300.1	Wheat	plastid	37.23	33.82
CDX86191	Canola	plastid	26.33	33.79
CDY52485	Canola	plastid	26.33	33.79
GSMUA_Achr3P04550_001	Banana	plastid	23.67	33.46
CDY21108	Canola	plastid	25.0	33.33
Os08t0439600-00	Rice	plastid	35.9	33.25
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	35.9	33.17
GSMUA_Achr5P22830_001	Banana	cytosol, nucleus, peroxisome	34.31	33.16
EES13906	Sorghum	plastid	36.7	33.01
Zm00001d032164_P001	Maize	plastid	35.37	32.92
CDY00013	Canola	cytosol, plastid	25.8	32.88
CDY30020	Canola	cytosol, plastid	24.2	32.27
Zm00001d020470_P001	Maize	plastid	35.64	31.83
Zm00001d005752_P001	Maize	plastid	35.64	31.83
Os09t0416600-02	Rice	plastid	36.97	31.31
HORVU5Hr1G065520.1	Barley	plastid	37.5	31.19
KXG35635	Sorghum	plastid	36.7	30.94
CDY00849	Canola	nucleus	23.94	30.93
CDY27882	Canola	nucleus	23.94	30.93
CDY00069	Canola	plastid	24.2	29.55
CDY19961	Canola	plastid	23.94	29.41
Os06t0181800-00	Rice	plastid	27.39	29.34
CDY66553	Canola	cytosol	21.81	29.08
Zm00001d045119_P001	Maize	plastid	26.6	28.49
CDX85324	Canola	plastid	21.01	28.42
CDX86317	Canola	plastid	23.14	28.34
CDY05690	Canola	mitochondrion, plastid	22.61	28.33
CDX82547	Canola	cytosol	21.81	28.18
CDY48744	Canola	mitochondrion, plastid	22.61	27.96
EER87970	Sorghum	plastid	26.33	27.58
CDX77134	Canola	cytosol, plastid	23.4	27.24
TraesCS7A01G146000.1	Wheat	plastid	24.47	26.98
CDY30531	Canola	plastid	22.07	25.3
TraesCS7B01G048400.1	Wheat	plastid	25.53	24.43
CDX79683	Canola	cytosol	20.48	24.29
CDX84556	Canola	cytosol	20.48	23.99
TraesCS7D01G147500.1	Wheat	plastid	25.0	23.92
HORVU7Hr1G029920.1	Barley	mitochondrion	24.73	23.37
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	26.33	22.3
Os02t0695050-00	Rice	extracellular, golgi, mitochondrion	15.16	21.92
Zm00001d037575_P001	Maize	cytosol	12.5	19.5
CDY33155	Canola	cytosol	20.48	19.25

Protein Annotations

EnsemblPlants:CDX69793	EnsemblPlantsGene:GSBRNA2T00135842001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF3	PFAM:PF05910
ProteinID:CDX69793	ProteinID:CDX69793.1	SEG:seg	UniParc:UPI0004EDCC83	MapMan:35.2	:

Description

BnaA10g21420D

Coordinates

chrLK031790:+:1867533..1869113

Molecular Weight (calculated)

42102.7 Da

IEP (calculated)

10.021

GRAVY (calculated)

-0.480

Length

376 amino acids

Sequence
(BLAST)

001: MSPSRNIPAW LRPTSDHPPH PPPPQSPSPL VSGDPNLTTC LYQTDHGVFY LTWSRTFLGG HSLNLFLHSQ DYYNRSSPLS FSSADLSLSS AVSFHLNLNT
101: LAFWRRRGSR SVSPKIQVFW DLTRAKFDSG SEPRSGFYIA VVVDGEMGLL VGDSVKEAYS RVKSAKPPTN PQALLLRKEH VFGARVFSTK ARFGGKSREI
201: SIDCRVDEDA RLSFSVDSKQ VLQIKRLRWK FRGNEKVEID GVPVQISWDV YNWLFQSKAS GEGGHAVFMF RFESDPEAEE EEDDERKEEE RSKNDVVVWK
301: PKQKQCGSSL GIKGIVEWRK MKRRFVKSKR SSSSSSISMS SASSACSSSV MEWARSAGAG AGNGLGFSLL VYAWIK

Best Arabidopsis Sequence Match ( AT5G11000.1 )
(BLAST)

001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK

Arabidopsis Description

AT5g11000/T30N20_270 [Source:UniProtKB/TrEMBL;Acc:Q9LEU1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.