CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY14873
CDY32954
CDY43608
CDY56353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27770.1	CDY14873	AT5G43320.1	21798944
AT2G27770.1	CDY32954	AT5G43320.1	21798944
AT2G27770.1	CDY43608	AT5G43320.1	21798944
AT2G27770.1	CDY56353	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30531	Canola	plastid	97.21	95.73
AT2G27770.1	Thale cress	plastid	82.04	82.81
VIT_06s0061g01360.t01	Wine grape	plastid	59.13	63.88
KRH26585	Soybean	plastid	56.04	60.13
KRH22720	Soybean	plastid	55.73	59.6
KRH25175	Soybean	cytosol	55.73	56.78
Solyc06g074500.1.1	Tomato	cytosol	52.01	55.45
KRH30504	Soybean	plastid	55.73	55.38
PGSC0003DMT400018411	Potato	cytosol	51.7	55.12
Solyc11g066930.1.1	Tomato	nucleus, plastid	48.92	49.53
GSMUA_Achr3P03050_001	Banana	nucleus	38.7	42.52
GSMUA_Achr8P07610_001	Banana	cytosol	36.84	41.32
GSMUA_Achr2P20270_001	Banana	cytosol	39.01	41.18
GSMUA_Achr8P29560_001	Banana	nucleus	37.46	41.02
GSMUA_Achr11P...	Banana	plastid	36.53	40.69
GSMUA_Achr10P...	Banana	nucleus, plastid	38.08	40.33
CDY21108	Canola	plastid	34.67	39.72
CDX79683	Canola	cytosol	37.77	38.49
CDX84556	Canola	cytosol	38.08	38.32
CDY30020	Canola	cytosol, plastid	33.44	38.3
CDY50761	Canola	cytosol, peroxisome, plastid	33.44	37.63
CDY72112	Canola	cytosol, peroxisome, plastid	32.51	37.23
CDX86191	Canola	plastid	32.82	36.18
CDY52485	Canola	plastid	32.82	36.18
CDY00013	Canola	cytosol, plastid	32.51	35.59
TraesCS7A01G277900.1	Wheat	plastid	29.72	32.32
TraesCS7D01G277700.1	Wheat	plastid	30.03	32.12
HORVU7Hr1G058790.3	Barley	plastid	30.03	32.01
OQU82880	Sorghum	plastid	32.2	31.61
CDY33155	Canola	cytosol	39.01	31.5
TraesCS7B01G175700.1	Wheat	plastid	29.41	31.46
Os12t0149000-01	Rice	plastid	31.58	31.1
Zm00001d052520_P001	Maize	plastid	30.65	31.03
TraesCS4B01G134800.1	Wheat	plastid	30.34	31.01
TraesCS4A01G183900.1	Wheat	plastid	30.03	30.79
HORVU5Hr1G041450.1	Barley	plastid	30.65	30.75
TraesCS5B01G130100.1	Wheat	plastid	30.03	30.6
KXG22966	Sorghum	plastid	30.96	30.58
TraesCS4D01G129600.1	Wheat	plastid	30.03	30.5
TraesCS5A01G130200.1	Wheat	plastid	29.72	30.48
Zm00001d004919_P001	Maize	plastid	30.34	30.34
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	31.89	29.94
Os04t0407500-00	Rice	cytosol, plastid	22.91	29.6
TraesCS2B01G308700.1	Wheat	cytosol	30.65	29.55
TraesCS2D01G290200.1	Wheat	cytosol	30.34	29.52
TraesCS5D01G137700.1	Wheat	plastid	29.1	29.28
Zm00001d025337_P001	Maize	cytosol	31.27	29.28
Zm00001d031962_P001	Maize	plastid	27.86	28.48
TraesCS2A01G292300.1	Wheat	cytosol	29.72	28.32
CDY00849	Canola	nucleus	25.39	28.18
CDY27882	Canola	nucleus	25.39	28.18
KXG26216	Sorghum	cytosol	31.89	27.61
HORVU4Hr1G001870.2	Barley	cytosol	28.79	27.03
TraesCS4A01G302100.1	Wheat	cytosol	28.79	26.27
TraesCS4B01G012200.1	Wheat	cytosol	28.48	26.06
CDY05690	Canola	mitochondrion, plastid	24.15	26.0
CDY51100	Canola	cytosol	27.24	25.88
CDY48744	Canola	mitochondrion, plastid	24.15	25.66
TraesCS4D01G010300.1	Wheat	cytosol	27.86	25.64
CDY66553	Canola	cytosol	22.29	25.53
CDX85324	Canola	plastid	21.67	25.18
CDY19961	Canola	plastid	23.84	25.16
CDY00069	Canola	plastid	23.84	25.0
CDX85733	Canola	cytosol, nucleus, plastid	26.32	24.78
CDX82547	Canola	cytosol	22.29	24.74
CDX86317	Canola	plastid	23.22	24.43
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	32.82	23.87
CDX69793	Canola	nucleus	27.24	23.4
CDX97072	Canola	nucleus	26.93	22.48
CDX76763	Canola	plastid	23.22	21.49
CDY56275	Canola	cytosol	9.6	20.26

Protein Annotations

EnsemblPlants:CDX77134	EnsemblPlantsGene:GSBRNA2T00127739001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF10	PFAM:PF05910
ProteinID:CDX77134	ProteinID:CDX77134.1	UniParc:UPI0004EC800E	MapMan:35.2	:	:

Description

BnaC04g39290D

Coordinates

chrLK031809:-:1370624..1371595

Molecular Weight (calculated)

36143.0 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.299

Length

323 amino acids

Sequence
(BLAST)

001: MRDLVSCFSE NSINVTHPLS LPSSCSNYNT SNACIPPSLI PSIQTSITSI YRITLPSKHL IIKVTWCNKI NPSHGLSISV SSADQNPSTS LKLNTSSRFF
101: RKKKGNKSVD SDLGKIEVLW DLSSAKYDSN TGPEPIQGFY VIVLVDARLA LLLGDSSEET LKKKGLAFDG FDSGKSLISR QEYFSGNTFY STKAKFAESG
201: DSHEIVIRCS AEKTEGLKQS SSTHRSPVLS VCIDEKTVTK VKRLQWNFRG NQTIFVDGLL VDLMWDVHDW FFCNPEGCGK AVFMFRTRNG LDSSRLWLEE
301: KKMVQKDEQD KLDFSLLIYA CKT

Best Arabidopsis Sequence Match ( AT2G27770.1 )
(BLAST)

001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT

Arabidopsis Description

At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.