CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19961	Canola	plastid	95.13	95.75
Bra036180.1-P	Field mustard	plastid	98.38	94.1
CDX86317	Canola	plastid	88.96	89.25
CDY05690	Canola	mitochondrion, plastid	86.04	88.33
CDX85324	Canola	plastid	79.22	87.77
CDY48744	Canola	mitochondrion, plastid	84.09	85.2
AT5G48270.1	Thale cress	plastid	86.36	82.61
CDY00849	Canola	nucleus	57.79	61.17
CDY27882	Canola	nucleus	57.79	61.17
KRH16994	Soybean	cytosol	55.84	56.39
KRH72631	Soybean	cytosol	55.52	55.7
PGSC0003DMT400069001	Potato	plastid	54.22	54.22
Solyc12g044670.1.1	Tomato	plastid	54.22	54.22
VIT_12s0057g01390.t01	Wine grape	mitochondrion	54.87	54.17
GSMUA_AchrUn_...	Banana	cytosol	46.75	51.61
PGSC0003DMT400006698	Potato	mitochondrion	50.0	50.0
KRG90008	Soybean	plastid	50.97	49.84
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	50.0	48.43
GSMUA_Achr3P12010_001	Banana	cytosol	42.21	47.1
Zm00001d015796_P001	Maize	cytosol	27.6	44.27
Zm00001d053654_P001	Maize	plastid	41.23	42.91
OQU84582	Sorghum	cytosol	42.86	41.12
TraesCS6B01G189500.1	Wheat	cytosol	39.29	38.78
TraesCS6D01G150500.1	Wheat	nucleus	38.96	38.34
TraesCS6A01G161700.1	Wheat	cytosol	38.64	38.02
CDY66553	Canola	cytosol	34.74	37.94
HORVU6Hr1G032720.1	Barley	cytosol	38.64	37.78
CDX82547	Canola	cytosol	34.74	36.77
CDY72112	Canola	cytosol, peroxisome, plastid	32.79	35.82
CDY50761	Canola	cytosol, peroxisome, plastid	32.79	35.19
CDY21108	Canola	plastid	31.82	34.75
CDX86191	Canola	plastid	32.79	34.47
CDY52485	Canola	plastid	32.79	34.47
CDY00013	Canola	cytosol, plastid	32.79	34.24
CDY30020	Canola	cytosol, plastid	31.17	34.04
Os02t0198800-01	Rice	cytosol, nucleus	40.91	33.87
CDX85733	Canola	cytosol, nucleus, plastid	28.57	25.66
CDY51100	Canola	cytosol	27.92	25.29
CDX69793	Canola	nucleus	29.55	24.2
CDX77134	Canola	cytosol, plastid	25.0	23.84
CDX97072	Canola	nucleus	29.87	23.77
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	33.12	22.97
CDX79683	Canola	cytosol	23.05	22.4
CDY30531	Canola	plastid	23.7	22.26
CDX84556	Canola	cytosol	23.05	22.12
CDX76763	Canola	plastid	25.0	22.06
CDY56275	Canola	cytosol	10.39	20.91
CDY33155	Canola	cytosol	21.1	16.25

Protein Annotations

EnsemblPlants:CDY00069	EnsemblPlantsGene:GSBRNA2T00109561001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910
ProteinID:CDY00069	ProteinID:CDY00069.1	SEG:seg	UniParc:UPI0004EE1393	MapMan:35.2	:

Description

BnaC09g02320D

Coordinates

chrLK031916:+:570742..571713

Molecular Weight (calculated)

34637.3 Da

IEP (calculated)

9.175

GRAVY (calculated)

-0.257

Length

308 amino acids

Sequence
(BLAST)

001: MLSFRIPSLG SNPTAFAAKI TDTTKTVAQL KSAATPTPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMISSLDKD MNYSCKIDLV KPWQFWSKRG
101: SKSFDVEGTF VEVFWDLRAA KLSGNGSPEP VSEYYVAVVS DEEIVLLLGD FKHKAYKRTK SRPALVEGFI YFKKESVFGK KTFSTRARFD EQRKEHEVVV
201: VMEEKDPEMR ISVDGVVVVH VKNLQWKFRG NQMVLVDKTP VMVYYDVHDW LFGSSESTTS SRSGLFLFKP EGGDSGGGSS PLSRYNSASS GYGTLHEFCL
301: VLYAWKHE

Best Arabidopsis Sequence Match ( AT2G04220.1 )
(BLAST)

001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.