Factsheet for PGSC0003DMT400006698

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 1
plastid 2
extracellular 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	99.35	96.23
PGSC0003DMT400069001	Potato	plastid	84.09	84.09
CDY27882	Canola	nucleus	63.96	67.7
CDY00849	Canola	nucleus	63.96	67.7
Bra015139.1-P	Field mustard	nucleus	65.26	66.56
AT4G12690.2	Thale cress	nucleus	60.71	65.61
KRH16994	Soybean	cytosol	64.94	65.57
AT2G04220.1	Thale cress	cytosol	64.61	64.82
VIT_12s0057g01390.t01	Wine grape	mitochondrion	65.26	64.42
KRH72631	Soybean	cytosol	62.99	63.19
KRG90008	Soybean	plastid	58.12	56.83
GSMUA_AchrUn_...	Banana	cytosol	48.7	53.76
CDX86317	Canola	plastid	52.6	52.77
CDY05690	Canola	mitochondrion, plastid	51.3	52.67
CDY48744	Canola	mitochondrion, plastid	51.3	51.97
CDX85324	Canola	plastid	46.43	51.44
GSMUA_Achr3P12010_001	Banana	cytosol	45.78	51.09
Bra037498.1-P	Field mustard	plastid	53.57	51.08
AT5G48270.1	Thale cress	plastid	52.92	50.62
Bra020708.1-P	Field mustard	mitochondrion	52.92	50.62
CDY00069	Canola	plastid	50.0	50.0
Bra036180.1-P	Field mustard	plastid	51.3	49.07
CDY19961	Canola	plastid	48.7	49.02
Zm00001d015796_P001	Maize	cytosol	30.19	48.44
PGSC0003DMT400076600	Potato	cytosol	44.48	45.97
Zm00001d053654_P001	Maize	plastid	42.86	44.59
TraesCS6B01G189500.1	Wheat	cytosol	43.83	43.27
HORVU6Hr1G032720.1	Barley	cytosol	43.83	42.86
OQU84582	Sorghum	cytosol	44.48	42.68
TraesCS6A01G161700.1	Wheat	cytosol	42.86	42.17
TraesCS6D01G150500.1	Wheat	nucleus	42.86	42.17
PGSC0003DMT400046694	Potato	cytosol	43.18	41.69
PGSC0003DMT400057872	Potato	cytosol	39.61	40.8
Os02t0198800-01	Rice	cytosol, nucleus	41.23	34.14
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	33.44	33.99
PGSC0003DMT400068894	Potato	plastid	30.52	26.93
PGSC0003DMT400006889	Potato	nucleus	13.31	26.8
PGSC0003DMT400018411	Potato	cytosol	24.68	25.08
PGSC0003DMT400089872	Potato	cytosol, peroxisome, plastid	26.95	23.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400006698	EnsemblPlantsGene:PGSC0003DMG400002603	EntrezGene:102583919	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2
PFAM:PF05910	PGSC:PGSC0003DMG400002603	RefSeq:XP_006343140.1	SEG:seg	UniParc:UPI00029569F2	UniProt:M0ZRU6
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002603]

Coordinates

chr3:+:60518589..60520196

Molecular Weight (calculated)

35336.8 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.493

Length

308 amino acids

Sequence
(BLAST)

001: MPHRVTARAK SFSSQPSIAQ KLKDDPVDPK NAQGSVTCVY QSHIGGYWRN VTVIWRKNMM NHCLTISVDS VENEDHQTCK IDLKPWHFWA KKGYKTFEVD
101: GHQLEAYWDL RSAKFSGSPE PFKDFYVALI AEEEVVLLLG DYKKKAYKRT KSRPALVDAL LFYKKEHVFG KKSFSTRAKF ENNKKESDIV VESSTSGPRD
201: PEMWISIDGI VLIHIKNLQW KFRGNQTVLV NEQHVQVFWD VHSWLFCEPG STHGLFIFKP GVSELESDRD GSSVGGDSDC SDHTKYYSTL SHSRASPFCL
301: FLCAWKIE

Best Arabidopsis Sequence Match ( AT2G04220.1 )
(BLAST)

001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.